Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AVFI_RS11485 | Genome accession | NZ_CP092712 |
| Coordinates | 2509664..2510068 (+) | Length | 134 a.a. |
| NCBI ID | WP_054775673.1 | Uniprot ID | - |
| Organism | Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2504664..2515068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVFI_RS11470 (AVFI_11470) | pdhR | 2506711..2507481 (-) | 771 | WP_005420885.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| AVFI_RS11475 (AVFI_11475) | ampD | 2507768..2508319 (-) | 552 | WP_155663039.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AVFI_RS11480 (AVFI_11480) | nadC | 2508433..2509320 (+) | 888 | WP_012533422.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AVFI_RS11485 (AVFI_11485) | pilA | 2509664..2510068 (+) | 405 | WP_054775673.1 | pilin | Machinery gene |
| AVFI_RS11490 (AVFI_11490) | pilB | 2510071..2511759 (+) | 1689 | WP_188863586.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AVFI_RS11495 (AVFI_11495) | pilC | 2511779..2513017 (+) | 1239 | WP_188863587.1 | type II secretion system F family protein | Machinery gene |
| AVFI_RS11500 (AVFI_11500) | pilD | 2513122..2514009 (+) | 888 | WP_017019492.1 | A24 family peptidase | Machinery gene |
| AVFI_RS11505 (AVFI_11505) | coaE | 2514006..2514629 (+) | 624 | WP_188863588.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13900.09 Da Isoelectric Point: 9.5850
>NTDB_id=659790 AVFI_RS11485 WP_054775673.1 2509664..2510068(+) (pilA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MKKRQGQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVSKSQAASGLATLKSLVTPAELIIQDNGELSGAITTLNISEDAN
KLGKLSISGATSIVFTFGADAGKLKTKTISMNRNASTGWSCSTTVTDGVEGCSK
MKKRQGQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVSKSQAASGLATLKSLVTPAELIIQDNGELSGAITTLNISEDAN
KLGKLSISGATSIVFTFGADAGKLKTKTISMNRNASTGWSCSTTVTDGVEGCSK
Nucleotide
Download Length: 405 bp
>NTDB_id=659790 AVFI_RS11485 WP_054775673.1 2509664..2510068(+) (pilA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGAAAAAGCGTCAAGGACAGAAAGGTTTTACTCTAATTGAGTTAATGATTGTAGTTGCAATTATTGGTGTATTATCAGC
AATCGCAATTCCTGCATATAAAGATTATGTATCAAAAAGCCAAGCAGCTTCAGGACTAGCTACATTAAAATCATTAGTTA
CCCCTGCTGAATTAATTATACAAGATAATGGTGAATTAAGCGGAGCTATAACAACTTTAAATATTAGTGAAGATGCCAAT
AAACTTGGTAAGTTATCAATTTCAGGTGCAACTTCAATCGTTTTTACATTTGGTGCTGATGCCGGGAAATTAAAGACTAA
GACAATCTCAATGAACAGAAATGCAAGCACTGGCTGGTCTTGTAGTACAACGGTTACTGATGGTGTAGAGGGCTGTTCTA
AATAG
ATGAAAAAGCGTCAAGGACAGAAAGGTTTTACTCTAATTGAGTTAATGATTGTAGTTGCAATTATTGGTGTATTATCAGC
AATCGCAATTCCTGCATATAAAGATTATGTATCAAAAAGCCAAGCAGCTTCAGGACTAGCTACATTAAAATCATTAGTTA
CCCCTGCTGAATTAATTATACAAGATAATGGTGAATTAAGCGGAGCTATAACAACTTTAAATATTAGTGAAGATGCCAAT
AAACTTGGTAAGTTATCAATTTCAGGTGCAACTTCAATCGTTTTTACATTTGGTGCTGATGCCGGGAAATTAAAGACTAA
GACAATCTCAATGAACAGAAATGCAAGCACTGGCTGGTCTTGTAGTACAACGGTTACTGATGGTGTAGAGGGCTGTTCTA
AATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
49.265 |
100 |
0.5 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.521 |
100 |
0.485 |
| pilA | Vibrio cholerae strain A1552 |
44.521 |
100 |
0.485 |
| pilA | Vibrio cholerae C6706 |
44.521 |
100 |
0.485 |
| pilA | Pseudomonas aeruginosa PAK |
38.926 |
100 |
0.433 |
| pilA/pilA1 | Eikenella corrodens VA1 |
39.716 |
100 |
0.418 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.129 |
100 |
0.396 |
| comP | Acinetobacter baylyi ADP1 |
38.235 |
100 |
0.388 |
| pilA | Acinetobacter baumannii strain A118 |
37.226 |
100 |
0.381 |