Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AVFI_RS11495 Genome accession   NZ_CP092712
Coordinates   2511779..2513017 (+) Length   412 a.a.
NCBI ID   WP_188863587.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2506779..2518017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS11475 (AVFI_11475) ampD 2507768..2508319 (-) 552 WP_155663039.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AVFI_RS11480 (AVFI_11480) nadC 2508433..2509320 (+) 888 WP_012533422.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AVFI_RS11485 (AVFI_11485) pilA 2509664..2510068 (+) 405 WP_054775673.1 pilin Machinery gene
  AVFI_RS11490 (AVFI_11490) pilB 2510071..2511759 (+) 1689 WP_188863586.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AVFI_RS11495 (AVFI_11495) pilC 2511779..2513017 (+) 1239 WP_188863587.1 type II secretion system F family protein Machinery gene
  AVFI_RS11500 (AVFI_11500) pilD 2513122..2514009 (+) 888 WP_017019492.1 A24 family peptidase Machinery gene
  AVFI_RS11505 (AVFI_11505) coaE 2514006..2514629 (+) 624 WP_188863588.1 dephospho-CoA kinase -
  AVFI_RS11510 (AVFI_11510) zapD 2514635..2515381 (+) 747 WP_005420900.1 cell division protein ZapD -
  AVFI_RS11515 (AVFI_11515) yacG 2515389..2515598 (+) 210 WP_012534335.1 DNA gyrase inhibitor YacG -
  AVFI_RS11520 (AVFI_11520) mutT 2515669..2516070 (-) 402 WP_012533258.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45953.36 Da        Isoelectric Point: 10.2202

>NTDB_id=659792 AVFI_RS11495 WP_188863587.1 2511779..2513017(+) (pilC) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MPKTKKKSKAIVLKSFQWRGINSSGKKVSGKQLALSDVEVRIKLTEQNIQIKKIKKRSISSFEKMKHAVKRKDITLFTRQ
LSTMLASGVPVVQSLQLIAENNTKAEMKSILHQVCLSIEAGTQLSKALSSSCSHFNSFYIDLIATGEETGSLAQAFARLA
EYREKSDALRSKVIKAMIYPSMVFLVAITVTILMLTFVIPEFENIFKGFGAELPWFTQQVINISHNLQEYGLHILLLMML
TILMLSALKKKSYFFRMKVSRHSLQVPIIGTVLSKAAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQ
HTAAGMPLYIAMRHTEAFPEMVLQMVMIGEESGKLDDMLNKIAHVYEEDVDNTVDNLGKILEPFIIVFLGTMIGGLVVSM
YLPIFNLMSVIG

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=659792 AVFI_RS11495 WP_188863587.1 2511779..2513017(+) (pilC) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGCCTAAAACAAAAAAGAAATCCAAAGCAATCGTATTAAAAAGCTTTCAATGGCGTGGCATTAACAGTTCAGGAAAAAA
GGTATCTGGAAAACAGCTCGCATTAAGTGATGTAGAAGTCAGAATAAAATTAACTGAGCAGAACATCCAGATAAAAAAAA
TTAAAAAGCGTAGTATTTCTAGCTTTGAAAAAATGAAGCACGCCGTTAAGCGCAAAGACATCACCCTCTTTACTCGCCAG
CTTTCCACCATGCTTGCCTCTGGTGTTCCGGTTGTTCAATCACTGCAACTCATCGCAGAAAACAACACCAAAGCGGAAAT
GAAATCCATCTTGCATCAAGTGTGCTTATCCATCGAAGCTGGTACTCAATTATCTAAAGCGCTTTCTAGTAGCTGTTCCC
ATTTTAATTCTTTTTATATCGACCTTATAGCGACCGGGGAAGAGACTGGCAGCTTAGCTCAAGCTTTCGCTCGTTTGGCA
GAGTATAGGGAAAAAAGTGATGCTTTACGTTCTAAAGTAATCAAAGCCATGATCTATCCAAGCATGGTCTTTTTAGTTGC
AATAACCGTAACGATTTTAATGCTTACTTTTGTTATCCCAGAGTTCGAGAATATTTTTAAAGGCTTTGGCGCTGAATTAC
CTTGGTTTACTCAACAAGTAATTAATATCTCTCATAACTTACAAGAGTATGGGCTACATATTCTTTTACTTATGATGCTC
ACCATCCTAATGCTCAGTGCATTAAAGAAGAAGTCCTACTTTTTTAGAATGAAAGTGAGTCGCCATAGCTTGCAAGTTCC
CATCATTGGTACCGTACTGTCTAAAGCGGCCATTGCTAAATTTTCCCGTACTTTAGCAACCAGTTTTAGTTCAGGTTTAC
CGATTTTGCACAGCTTACAAACCACCAGTAAAACCGCCGGTAATCTTTACTATCAAGAAGCCATCTTATCTGTACAACAG
CACACCGCTGCTGGTATGCCGCTTTATATTGCCATGCGACATACCGAAGCCTTTCCTGAAATGGTACTGCAAATGGTTAT
GATTGGAGAAGAATCAGGAAAGCTAGATGACATGCTAAATAAAATTGCTCATGTTTATGAGGAAGATGTTGATAACACCG
TTGATAACTTAGGTAAAATTCTAGAGCCGTTTATTATCGTTTTTCTTGGCACCATGATTGGTGGTTTAGTGGTGTCTATG
TACCTTCCAATCTTTAACCTAATGAGTGTTATTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

64.373

98.786

0.636
  pilC Vibrio campbellii strain DS40M4

62.808

98.544

0.619
  pilC Acinetobacter baylyi ADP1

39.851

98.058

0.391
  pilG Neisseria gonorrhoeae MS11

40.1

96.845

0.388
  pilG Neisseria meningitidis 44/76-A

39.85

96.845

0.386
  pilC Acinetobacter baumannii D1279779

39.109

98.058

0.383
  pilC Pseudomonas stutzeri DSM 10701

39.206

97.816

0.383
  pilC Legionella pneumophila strain ERS1305867

39.348

96.845

0.381