Detailed information NTG0659793

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AVFI_RS11500
• Genome accession: NZ_CP092712
• Coordinates: 2513122..2514009 (+)
• Length: 295 a.a.
• NCBI ID: WP_017019492.1
• Uniprot ID: -
• Organism: Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2508122..2519009

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVFI_RS11480 (AVFI_11480)	nadC	2508433..2509320 (+)	888	WP_012533422.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AVFI_RS11485 (AVFI_11485)	pilA	2509664..2510068 (+)	405	WP_054775673.1	pilin	Machinery gene
AVFI_RS11490 (AVFI_11490)	pilB	2510071..2511759 (+)	1689	WP_188863586.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AVFI_RS11495 (AVFI_11495)	pilC	2511779..2513017 (+)	1239	WP_188863587.1	type II secretion system F family protein	Machinery gene
AVFI_RS11500 (AVFI_11500)	pilD	2513122..2514009 (+)	888	WP_017019492.1	A24 family peptidase	Machinery gene
AVFI_RS11505 (AVFI_11505)	coaE	2514006..2514629 (+)	624	WP_188863588.1	dephospho-CoA kinase	-
AVFI_RS11510 (AVFI_11510)	zapD	2514635..2515381 (+)	747	WP_005420900.1	cell division protein ZapD	-
AVFI_RS11515 (AVFI_11515)	yacG	2515389..2515598 (+)	210	WP_012534335.1	DNA gyrase inhibitor YacG	-
AVFI_RS11520 (AVFI_11520)	mutT	2515669..2516070 (-)	402	WP_012533258.1	8-oxo-dGTP diphosphatase MutT	-
AVFI_RS11525 (AVFI_11525)	secA	2516162..2518885 (-)	2724	WP_012533557.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 33160.59 Da
• Isoelectric Point: 7.4258

>NTDB_id=659793 AVFI_RS11500 WP_017019492.1 2513122..2514009(+) (pilD) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MAVFDYYPWLFPLFATLFGLLVGSFLNVVIYRLPIMMEKEWKKDCIDCFPDLAPEKTNEEKEETFNLSVPRSRCPKCQTQ
IKFYDNIPVISWLLLKGKCRKCSNPISFRYPAIELLSGAMCFAVSYLLPFSYFAVAAVLFTLVLIALTFIDIDTMLLPDQ
ITLPLLWSGLYLALVGWSSVSLVDSVVGAMAGYLILWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPLLILLSS
VVGAIIGVIMLTAQKKGFDKAIPFGPYLAIAGWVCLLWGQNISQWYFNHILGLPL

Nucleotide

• Length: 888 bp

>NTDB_id=659793 AVFI_RS11500 WP_017019492.1 2513122..2514009(+) (pilD) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGGCTGTTTTTGATTATTACCCTTGGCTTTTCCCTCTATTTGCCACCCTATTTGGTTTGCTTGTTGGTAGTTTTTTAAA
TGTCGTAATTTATCGTTTACCCATCATGATGGAAAAGGAATGGAAAAAAGACTGCATTGATTGCTTTCCAGATCTCGCCC
CAGAAAAAACCAATGAAGAAAAAGAAGAAACCTTTAATTTAAGTGTTCCTCGTTCTCGCTGTCCAAAATGTCAAACTCAA
ATTAAATTCTATGACAACATTCCTGTCATTAGTTGGCTTTTGTTAAAAGGAAAGTGTCGTAAATGCAGTAACCCTATCAG
TTTTCGATATCCTGCAATTGAACTACTATCAGGCGCAATGTGTTTTGCCGTTTCGTACTTATTACCCTTCTCATATTTTG
CTGTTGCTGCCGTTCTATTTACTCTAGTTTTGATCGCATTAACCTTTATTGATATTGATACCATGTTACTGCCAGATCAA
ATCACCCTACCTCTACTATGGAGTGGTCTATACTTAGCTCTAGTGGGCTGGAGTTCAGTAAGCTTAGTTGATTCCGTTGT
CGGAGCAATGGCTGGCTATTTGATTTTATGGTCTATTTACTGGGGCTTTAAGCTACTTACAGGCAAAGAAGGCATGGGTT
ATGGTGATTTCAAATTACTCGCAGCTCTTGGAGCATGGCTTGGTTGGCAGCAGCTACCATTGCTTATTCTATTGTCTTCT
GTTGTCGGAGCAATCATTGGTGTCATCATGCTAACCGCTCAAAAGAAAGGGTTTGATAAAGCAATTCCTTTTGGTCCTTA
TTTAGCCATTGCTGGCTGGGTCTGCCTATTATGGGGACAAAACATTAGCCAATGGTATTTTAATCACATTCTAGGTTTGC
CACTATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-126)

• Type IV leader peptidase family (Peptidase_A24) (139-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	66.894	99.322	0.664
pilD	Vibrio cholerae strain A1552	64.407	100	0.644
pilD	Acinetobacter baumannii D1279779	50.542	93.898	0.475
pilD	Acinetobacter nosocomialis M2	50.181	93.898	0.471
pilD	Neisseria gonorrhoeae MS11	46.021	97.966	0.451