Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MKD48_RS06340 Genome accession   NZ_CP092475
Coordinates   1213327..1213638 (+) Length   103 a.a.
NCBI ID   WP_248313621.1    Uniprot ID   -
Organism   Staphylococcus aureus strain P5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1208327..1218638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD48_RS06310 - 1209110..1209313 (+) 204 WP_000087561.1 YqgQ family protein -
  MKD48_RS06315 - 1209310..1210296 (+) 987 WP_000161315.1 ROK family glucokinase -
  MKD48_RS06320 - 1210296..1210625 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MKD48_RS06325 - 1210622..1211245 (+) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  MKD48_RS06330 comGA 1211297..1212271 (+) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  MKD48_RS06335 comGB 1212243..1213313 (+) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  MKD48_RS06340 comGC 1213327..1213638 (+) 312 WP_248313621.1 competence type IV pilus major pilin ComGC Machinery gene
  MKD48_RS06345 comGD 1213616..1214062 (+) 447 WP_075583651.1 competence type IV pilus minor pilin ComGD Machinery gene
  MKD48_RS06350 comGE 1214049..1214348 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  MKD48_RS06355 comGF 1214266..1214763 (+) 498 WP_029697681.1 competence type IV pilus minor pilin ComGF Machinery gene
  MKD48_RS06360 - 1214860..1215006 (+) 147 WP_001789879.1 hypothetical protein -
  MKD48_RS06365 - 1214996..1215520 (+) 525 WP_001015122.1 shikimate kinase -
  MKD48_RS06370 gcvT 1215679..1216770 (+) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  MKD48_RS06375 gcvPA 1216790..1218136 (+) 1347 WP_000019688.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11333.39 Da        Isoelectric Point: 8.5268

>NTDB_id=657900 MKD48_RS06340 WP_248313621.1 1213327..1213638(+) (comGC) [Staphylococcus aureus strain P5]
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHMQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=657900 MKD48_RS06340 WP_248313621.1 1213327..1213638(+) (comGC) [Staphylococcus aureus strain P5]
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATGCAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATCACAATTAGTAATGGAGAAGCAGTTGCAAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

99.029

100

0.99
  comGC Staphylococcus aureus MW2

99.029

100

0.99
  comGC/cglC Streptococcus pneumoniae Rx1

46.078

99.029

0.456
  comGC/cglC Streptococcus pneumoniae D39

46.078

99.029

0.456
  comGC/cglC Streptococcus pneumoniae R6

46.078

99.029

0.456
  comGC/cglC Streptococcus pneumoniae TIGR4

46.078

99.029

0.456
  comGC/cglC Streptococcus mitis NCTC 12261

51.163

83.495

0.427
  comGC/cglC Streptococcus mitis SK321

51.163

83.495

0.427
  comYC Streptococcus gordonii str. Challis substr. CH1

42.857

95.146

0.408
  comYC Streptococcus suis isolate S10

48.718

75.728

0.369
  comGC Lactococcus lactis subsp. cremoris KW2

46.341

79.612

0.369