Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   MKD48_RS06355 Genome accession   NZ_CP092475
Coordinates   1214266..1214763 (+) Length   165 a.a.
NCBI ID   WP_029697681.1    Uniprot ID   A0AAE2ZZ83
Organism   Staphylococcus aureus strain P5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1209266..1219763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKD48_RS06315 - 1209310..1210296 (+) 987 WP_000161315.1 ROK family glucokinase -
  MKD48_RS06320 - 1210296..1210625 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MKD48_RS06325 - 1210622..1211245 (+) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  MKD48_RS06330 comGA 1211297..1212271 (+) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  MKD48_RS06335 comGB 1212243..1213313 (+) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  MKD48_RS06340 comGC 1213327..1213638 (+) 312 WP_248313621.1 competence type IV pilus major pilin ComGC Machinery gene
  MKD48_RS06345 comGD 1213616..1214062 (+) 447 WP_075583651.1 competence type IV pilus minor pilin ComGD Machinery gene
  MKD48_RS06350 comGE 1214049..1214348 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  MKD48_RS06355 comGF 1214266..1214763 (+) 498 WP_029697681.1 competence type IV pilus minor pilin ComGF Machinery gene
  MKD48_RS06360 - 1214860..1215006 (+) 147 WP_001789879.1 hypothetical protein -
  MKD48_RS06365 - 1214996..1215520 (+) 525 WP_001015122.1 shikimate kinase -
  MKD48_RS06370 gcvT 1215679..1216770 (+) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  MKD48_RS06375 gcvPA 1216790..1218136 (+) 1347 WP_000019688.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MKD48_RS06380 gcvPB 1218129..1219601 (+) 1473 WP_000202191.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19211.94 Da        Isoelectric Point: 10.2436

>NTDB_id=657903 MKD48_RS06355 WP_029697681.1 1214266..1214763(+) (comGF) [Staphylococcus aureus strain P5]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFRGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=657903 MKD48_RS06355 WP_029697681.1 1214266..1214763(+) (comGF) [Staphylococcus aureus strain P5]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAGAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(69-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

97.576

100

0.976