Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OHA65_RS27095 Genome accession   NZ_CP108271
Coordinates   5743164..5744798 (+) Length   544 a.a.
NCBI ID   WP_405762576.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00045     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5738164..5749798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA65_RS27065 (OHA65_26945) lepB 5739089..5739919 (+) 831 WP_371644961.1 signal peptidase I -
  OHA65_RS27070 (OHA65_26950) lepB 5740033..5740926 (+) 894 WP_327285803.1 signal peptidase I -
  OHA65_RS27075 (OHA65_26955) lepB 5740970..5741758 (+) 789 WP_327278787.1 signal peptidase I -
  OHA65_RS27080 (OHA65_26960) - 5741748..5742254 (+) 507 WP_327278788.1 NUDIX hydrolase -
  OHA65_RS27085 (OHA65_26965) - 5742310..5742618 (+) 309 WP_006139554.1 DUF2469 domain-containing protein -
  OHA65_RS27090 (OHA65_26970) - 5742793..5743164 (+) 372 WP_327278789.1 YraN family protein -
  OHA65_RS27095 (OHA65_26975) comM 5743164..5744798 (+) 1635 WP_405762576.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OHA65_RS27100 (OHA65_26980) dprA 5744795..5746012 (+) 1218 WP_328763844.1 DNA-processing protein DprA -
  OHA65_RS27105 (OHA65_26985) whiG 5746222..5747058 (+) 837 WP_327278792.1 RNA polymerase sigma factor WhiG -
  OHA65_RS27110 (OHA65_26990) - 5747129..5747668 (+) 540 WP_327285804.1 helix-turn-helix domain-containing protein -
  OHA65_RS27115 (OHA65_26995) - 5747743..5748207 (-) 465 WP_327278793.1 M23 family metallopeptidase -
  OHA65_RS27120 (OHA65_27000) rpsB 5748459..5749376 (+) 918 WP_327278794.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 544 a.a.        Molecular weight: 56480.99 Da        Isoelectric Point: 6.6594

>NTDB_id=657902 OHA65_RS27095 WP_405762576.1 5743164..5744798(+) (comM) [Streptomyces sp. NBC_00045]
MGFARACSVALVGVDGVVVEVQADLEPGVAAFTLVGLPDKTLVESRDRVRAAVVNSGAAWPQKKLTVGLSPASVPKSGAG
FDLAVAAAVLGAAEVIDPAAIADLVLIGELGLDGRVRPVRGILPAVLAAADAGYRNVVVPQQCAAEAVLVPDVRVLGVRS
LRQLIAVLTDAEVPEEEPPDPPGRPDPMLAGLVLPGAGLGTGISRARPDADESPDVPDLSDVAGQHGARRALEVAAAGGH
HLFLSGPPGAGKTMLAERIPWILPPLSRQDSLEVTAVHSVAGILPPGEPLVARPPYCAPHHSATMQSLVGGGAGVPRPGA
VSLAHRGVLFLDEAPEFSTKALDALRQPLESGHVVIARAAGVVRLPARFLMVLAANPCPCGRHTLLGAGCECPVSVIRRY
QARLSGPLLDRVDLRVEVEPVTRSDLLGRGGRGEPTAAVADRVREARDRTAARLADTPWRLNAEVPGHELRTRWQAAPGA
LAQAERDLERGLLTARGLDRVLRVAWTVADLRGWDRPDALDVAVALELRTGIARGAAQALGTGP

Nucleotide


Download         Length: 1635 bp        

>NTDB_id=657902 OHA65_RS27095 WP_405762576.1 5743164..5744798(+) (comM) [Streptomyces sp. NBC_00045]
ATGGGCTTCGCACGAGCCTGCTCGGTGGCCCTGGTCGGCGTCGACGGAGTGGTGGTCGAGGTCCAGGCCGACCTGGAGCC
CGGGGTTGCCGCCTTCACCTTGGTGGGCCTGCCCGACAAGACCCTGGTCGAAAGTCGGGACCGGGTCCGGGCCGCCGTCG
TGAACTCGGGCGCCGCATGGCCGCAGAAGAAACTCACCGTCGGACTCAGCCCGGCCTCCGTCCCGAAATCGGGCGCCGGA
TTCGACCTGGCCGTCGCGGCCGCCGTACTGGGCGCCGCCGAGGTGATCGACCCCGCCGCCATCGCCGACCTCGTGCTCAT
CGGAGAGCTGGGGCTGGACGGCCGGGTGCGGCCGGTACGGGGCATCCTGCCCGCCGTCCTCGCAGCTGCCGACGCCGGAT
ACCGCAACGTGGTGGTGCCGCAGCAGTGCGCCGCCGAGGCCGTGCTCGTCCCCGACGTCCGCGTGCTCGGCGTACGCAGC
CTGCGCCAACTGATCGCCGTCCTCACCGACGCAGAGGTCCCCGAGGAGGAACCGCCCGACCCACCGGGCCGCCCGGACCC
CATGCTGGCCGGACTCGTGCTCCCGGGCGCCGGCCTCGGCACCGGCATCTCCCGCGCCCGGCCCGATGCGGACGAGAGCC
CGGACGTCCCCGACCTCTCCGACGTCGCCGGACAGCATGGCGCCCGCCGGGCCCTGGAGGTGGCCGCCGCCGGGGGCCAC
CACCTCTTCCTCAGCGGACCACCGGGAGCGGGCAAGACCATGCTGGCCGAGCGCATCCCGTGGATCCTGCCGCCGCTGTC
CCGGCAGGACTCACTGGAAGTCACCGCCGTCCACTCGGTCGCCGGCATCCTCCCGCCCGGCGAACCACTGGTCGCCCGGC
CCCCGTACTGCGCACCCCACCACTCCGCGACCATGCAGTCCCTGGTCGGCGGCGGAGCGGGAGTGCCCCGGCCCGGGGCC
GTCTCCCTGGCCCACCGCGGCGTCCTGTTCCTCGACGAGGCCCCCGAATTCAGCACCAAGGCGCTCGACGCGCTGCGCCA
GCCCCTCGAATCGGGGCACGTGGTCATCGCCCGGGCCGCCGGGGTGGTGCGGCTGCCGGCCAGGTTCCTGATGGTGCTCG
CTGCCAACCCCTGCCCGTGCGGCCGGCACACCCTGCTGGGAGCCGGCTGCGAATGCCCGGTATCCGTGATCCGGCGCTAC
CAGGCCAGGCTCTCCGGCCCCCTGCTGGACCGGGTGGACCTGCGCGTGGAGGTCGAGCCGGTCACCCGCTCCGACCTGCT
GGGCCGCGGCGGCCGCGGCGAGCCCACGGCGGCCGTCGCCGACCGGGTCCGCGAGGCCAGGGACCGCACCGCTGCCCGGC
TCGCCGACACCCCGTGGCGGCTCAACGCCGAAGTCCCCGGACACGAGCTGCGGACCCGCTGGCAGGCGGCCCCCGGAGCA
CTGGCACAAGCCGAACGGGACCTGGAGCGAGGGCTGCTCACCGCCCGCGGGCTCGACCGGGTGCTGCGGGTCGCCTGGAC
CGTGGCCGACCTGAGGGGCTGGGACCGCCCCGATGCACTGGACGTCGCCGTCGCCCTCGAACTGCGGACCGGCATCGCCC
GCGGCGCGGCCCAGGCGCTGGGAACCGGGCCATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(433-529)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(218-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

40

98.346

0.393
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.891

94.853

0.388
  comM Vibrio cholerae strain A1552

40.891

94.853

0.388
  comM Acinetobacter baylyi ADP1

37.899

97.978

0.371
  comM Haemophilus influenzae Rd KW20

38.185

97.243

0.371
  comM Glaesserella parasuis strain SC1401

38.041

97.61

0.371