Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   STRIC_RS08530 Genome accession   NZ_AEUX02000007
Coordinates   167404..167730 (+) Length   108 a.a.
NCBI ID   WP_008090323.1    Uniprot ID   G5K4K9
Organism   Streptococcus ictaluri 707-05     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 162404..172730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRIC_RS08515 (STRIC_1743) - 165045..165410 (+) 366 WP_008090041.1 DUF1033 family protein -
  STRIC_RS08520 (STRIC_1744) comYA 165492..166436 (+) 945 WP_008089649.1 competence type IV pilus ATPase ComGA Machinery gene
  STRIC_RS08525 (STRIC_1745) comYB 166369..167403 (+) 1035 WP_050897398.1 competence type IV pilus assembly protein ComGB Machinery gene
  STRIC_RS08530 (STRIC_1746) comYC 167404..167730 (+) 327 WP_008090323.1 competence type IV pilus major pilin ComGC Machinery gene
  STRIC_RS08535 (STRIC_1747) comGD 167705..168133 (+) 429 WP_008090412.1 competence type IV pilus minor pilin ComGD -
  STRIC_RS08540 (STRIC_1748) comGE 168141..168380 (+) 240 WP_234944206.1 competence type IV pilus minor pilin ComGE -
  STRIC_RS08545 comYF 168340..168801 (+) 462 WP_050897399.1 competence type IV pilus minor pilin ComGF Machinery gene
  STRIC_RS08550 (STRIC_1750) comGG 168824..169108 (+) 285 WP_162097589.1 competence type IV pilus minor pilin ComGG -
  STRIC_RS08555 (STRIC_1751) comYH 169157..170110 (+) 954 WP_008089827.1 class I SAM-dependent methyltransferase Machinery gene
  STRIC_RS08560 (STRIC_1752) - 170167..171360 (+) 1194 WP_008089899.1 acetate kinase -
  STRIC_RS08565 (STRIC_1753) - 171504..171710 (+) 207 WP_008090214.1 helix-turn-helix transcriptional regulator -
  STRIC_RS08570 (STRIC_1754) - 171715..172167 (+) 453 WP_008090045.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12175.22 Da        Isoelectric Point: 9.2854

>NTDB_id=64584 STRIC_RS08530 WP_008090323.1 167404..167730(+) (comYC) [Streptococcus ictaluri 707-05]
MKNYLSRLKAPKVAAFTLLEMLIVLLIISVLMLLFVPNLSQQKEKVTDTGNAAVVKIVENQAELYELSHGAKPTLTQLTD
EGSITAKQQKVYQEYYGKHKDETQKLSH

Nucleotide


Download         Length: 327 bp        

>NTDB_id=64584 STRIC_RS08530 WP_008090323.1 167404..167730(+) (comYC) [Streptococcus ictaluri 707-05]
ATGAAGAACTATTTATCAAGGCTAAAAGCACCTAAAGTTGCTGCATTCACACTTCTGGAAATGTTAATTGTTTTACTTAT
CATTAGTGTGTTGATGCTTTTATTTGTACCTAATTTAAGTCAACAAAAAGAAAAGGTAACTGACACAGGAAATGCTGCTG
TGGTTAAAATTGTGGAAAATCAAGCAGAGCTTTATGAACTATCTCATGGTGCTAAGCCCACTTTAACTCAGCTTACTGAT
GAAGGCAGTATTACAGCCAAACAGCAAAAAGTTTATCAAGAGTATTATGGCAAGCATAAAGATGAAACTCAGAAATTATC
ACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K4K9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

60.952

97.222

0.593
  comGC/cglC Streptococcus mitis SK321

55.556

100

0.556
  comGC/cglC Streptococcus pneumoniae TIGR4

54.63

100

0.546
  comGC/cglC Streptococcus pneumoniae D39

55.14

99.074

0.546
  comGC/cglC Streptococcus pneumoniae R6

55.14

99.074

0.546
  comGC/cglC Streptococcus pneumoniae Rx1

55.14

99.074

0.546
  comGC/cglC Streptococcus mitis NCTC 12261

58.586

91.667

0.537
  comYC Streptococcus mutans UA140

53.846

96.296

0.519
  comYC Streptococcus mutans UA159

53.846

96.296

0.519
  comGC Lactococcus lactis subsp. cremoris KW2

53.922

94.444

0.509
  comYC Streptococcus suis isolate S10

56.818

81.481

0.463

Multiple sequence alignment