Detailed information NTG0064585

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: STRIC_RS08545
• Genome accession: NZ_AEUX02000007
• Coordinates: 168340..168801 (+)
• Length: 153 a.a.
• NCBI ID: WP_050897399.1
• Uniprot ID: -
• Organism: Streptococcus ictaluri 707-05
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 163340..173801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STRIC_RS08515 (STRIC_1743)	-	165045..165410 (+)	366	WP_008090041.1	DUF1033 family protein	-
STRIC_RS08520 (STRIC_1744)	comYA	165492..166436 (+)	945	WP_008089649.1	competence type IV pilus ATPase ComGA	Machinery gene
STRIC_RS08525 (STRIC_1745)	comYB	166369..167403 (+)	1035	WP_050897398.1	competence type IV pilus assembly protein ComGB	Machinery gene
STRIC_RS08530 (STRIC_1746)	comYC	167404..167730 (+)	327	WP_008090323.1	competence type IV pilus major pilin ComGC	Machinery gene
STRIC_RS08535 (STRIC_1747)	comGD	167705..168133 (+)	429	WP_008090412.1	competence type IV pilus minor pilin ComGD	-
STRIC_RS08540 (STRIC_1748)	comGE	168141..168380 (+)	240	WP_234944206.1	competence type IV pilus minor pilin ComGE	-
STRIC_RS08545	comYF	168340..168801 (+)	462	WP_050897399.1	competence type IV pilus minor pilin ComGF	Machinery gene
STRIC_RS08550 (STRIC_1750)	comGG	168824..169108 (+)	285	WP_162097589.1	competence type IV pilus minor pilin ComGG	-
STRIC_RS08555 (STRIC_1751)	comYH	169157..170110 (+)	954	WP_008089827.1	class I SAM-dependent methyltransferase	Machinery gene
STRIC_RS08560 (STRIC_1752)	-	170167..171360 (+)	1194	WP_008089899.1	acetate kinase	-
STRIC_RS08565 (STRIC_1753)	-	171504..171710 (+)	207	WP_008090214.1	helix-turn-helix transcriptional regulator	-
STRIC_RS08570 (STRIC_1754)	-	171715..172167 (+)	453	WP_008090045.1	hypothetical protein	-
STRIC_RS08575 (STRIC_1755)	-	172176..172856 (+)	681	WP_008090147.1	CPBP family intramembrane glutamic endopeptidase	-
STRIC_RS11600 (STRIC_1756)	-	172929..173768 (+)	840	WP_008090293.1	hypothetical protein	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 17904.87 Da
• Isoelectric Point: 10.1041

>NTDB_id=64585 STRIC_RS08545 WP_050897399.1 168340..168801(+) (comYF) [Streptococcus ictaluri 707-05]
MKIKKKFLEWSKSKVTAFTLLECLLTLLIISGSLIVYQGLTKSLFANCHYLAKNDQDQWLLFAQQLRTELAESHLPKVVN
NKLYVEKGKKSLAFGQYKSHDFRKTSQTGRGYQPMLFHLTTSKLTLEGERLHIHFKWESGLERIFIYDFQEKS

Nucleotide

• Length: 462 bp

>NTDB_id=64585 STRIC_RS08545 WP_050897399.1 168340..168801(+) (comYF) [Streptococcus ictaluri 707-05]
ATGAAAATCAAAAAGAAGTTCTTAGAATGGAGCAAGAGTAAAGTAACTGCTTTTACTTTACTAGAATGCTTATTGACTTT
GCTTATCATTTCGGGATCGCTCATAGTTTATCAGGGACTCACAAAAAGTCTTTTTGCTAATTGTCATTATCTCGCGAAAA
ATGATCAAGATCAGTGGCTTTTGTTTGCGCAACAGTTACGGACAGAACTAGCTGAATCTCATTTGCCAAAAGTGGTCAAT
AATAAATTATATGTTGAAAAAGGCAAGAAGTCCTTGGCTTTTGGTCAATACAAGAGTCATGATTTTAGGAAGACTTCTCA
AACAGGTAGAGGGTACCAACCTATGCTCTTTCATTTGACCACTAGTAAGTTGACTTTAGAGGGAGAACGGCTCCATATTC
ATTTCAAATGGGAAAGTGGCTTGGAGAGGATATTTATCTATGATTTTCAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (52-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	53.521	92.81	0.497
comYF	Streptococcus mutans UA159	52.817	92.81	0.49
comGF/cglF	Streptococcus pneumoniae D39	46.377	90.196	0.418
comGF/cglF	Streptococcus pneumoniae TIGR4	46.377	90.196	0.418
comGF/cglF	Streptococcus pneumoniae R6	46.377	90.196	0.418
comGF/cglF	Streptococcus pneumoniae Rx1	46.377	90.196	0.418
comGF/cglF	Streptococcus mitis NCTC 12261	44.203	90.196	0.399
comGF	Lactococcus lactis subsp. cremoris KW2	42.857	91.503	0.392
comGF/cglF	Streptococcus mitis SK321	43.478	90.196	0.392