Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   STRIC_RS08525 Genome accession   NZ_AEUX02000007
Coordinates   166369..167403 (+) Length   344 a.a.
NCBI ID   WP_050897398.1    Uniprot ID   -
Organism   Streptococcus ictaluri 707-05     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 161369..172403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRIC_RS08515 (STRIC_1743) - 165045..165410 (+) 366 WP_008090041.1 DUF1033 family protein -
  STRIC_RS08520 (STRIC_1744) comYA 165492..166436 (+) 945 WP_008089649.1 competence type IV pilus ATPase ComGA Machinery gene
  STRIC_RS08525 (STRIC_1745) comYB 166369..167403 (+) 1035 WP_050897398.1 competence type IV pilus assembly protein ComGB Machinery gene
  STRIC_RS08530 (STRIC_1746) comYC 167404..167730 (+) 327 WP_008090323.1 competence type IV pilus major pilin ComGC Machinery gene
  STRIC_RS08535 (STRIC_1747) comGD 167705..168133 (+) 429 WP_008090412.1 competence type IV pilus minor pilin ComGD -
  STRIC_RS08540 (STRIC_1748) comGE 168141..168380 (+) 240 WP_234944206.1 competence type IV pilus minor pilin ComGE -
  STRIC_RS08545 comYF 168340..168801 (+) 462 WP_050897399.1 competence type IV pilus minor pilin ComGF Machinery gene
  STRIC_RS08550 (STRIC_1750) comGG 168824..169108 (+) 285 WP_162097589.1 competence type IV pilus minor pilin ComGG -
  STRIC_RS08555 (STRIC_1751) comYH 169157..170110 (+) 954 WP_008089827.1 class I SAM-dependent methyltransferase Machinery gene
  STRIC_RS08560 (STRIC_1752) - 170167..171360 (+) 1194 WP_008089899.1 acetate kinase -
  STRIC_RS08565 (STRIC_1753) - 171504..171710 (+) 207 WP_008090214.1 helix-turn-helix transcriptional regulator -
  STRIC_RS08570 (STRIC_1754) - 171715..172167 (+) 453 WP_008090045.1 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39364.67 Da        Isoelectric Point: 10.0630

>NTDB_id=64583 STRIC_RS08525 WP_050897398.1 166369..167403(+) (comYB) [Streptococcus ictaluri 707-05]
MTSFLTQDISLSKRQGSKKLSPKAQLKLVQLLDNLLSNGFSLSETVSFLKKSQLLSNNEITKMETSLLKGEPLADMLASL
GFSEGIITQVNLADSHGNLGLTLQKVGDYLKQVLLIRRKIVEVATYPLILFVFLIAIMLGLRHYLIPQLTIQNRLTYFLM
HFPEFFLASLALVALMVLAFLLRWRRQARLQLVSRFSRWPIFGYFLKHYLTAYYAKEWGNLIGQGLELQSLLAIMAQEKS
QLMRELAKDMQSHLLSGKSFHQQVAAYPFFKKELGLIIEYGDMKSKLGYELEVYARESWSRFFSQLHQATQLIQPLIFLL
VALIIVVIYAAILLPIYQNMGDVF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=64583 STRIC_RS08525 WP_050897398.1 166369..167403(+) (comYB) [Streptococcus ictaluri 707-05]
TTGACCAGCTTTTTAACTCAGGACATCTCACTGAGCAAGAGGCAAGGATCGAAAAAATTATCGCCTAAAGCACAATTAAA
ACTGGTGCAACTACTGGATAACCTATTATCAAATGGTTTTAGCTTGTCAGAGACGGTTAGCTTTTTGAAAAAGAGTCAAC
TACTTTCTAATAACGAGATAACAAAAATGGAAACTAGTCTTTTAAAAGGGGAGCCTTTGGCTGACATGCTTGCAAGCTTG
GGTTTTTCAGAAGGAATTATAACTCAGGTCAATCTAGCGGATAGTCACGGTAATTTGGGATTAACGCTTCAGAAAGTCGG
AGATTATTTAAAACAAGTACTCTTAATACGGCGAAAGATTGTGGAGGTCGCTACTTATCCTTTGATTCTATTTGTTTTTT
TAATCGCGATAATGCTAGGTTTAAGGCATTATTTAATTCCACAATTGACTATTCAAAATCGACTAACTTATTTTTTGATG
CACTTTCCAGAATTTTTCTTAGCTTCATTAGCTTTAGTAGCCTTAATGGTACTAGCTTTCCTGTTGCGATGGAGAAGACA
AGCGCGGTTACAGCTGGTCAGTCGTTTTAGTCGATGGCCCATTTTCGGCTATTTTCTCAAACATTATTTAACAGCCTATT
ATGCTAAGGAATGGGGCAATTTAATTGGCCAGGGTTTGGAATTGCAAAGCCTATTAGCCATTATGGCTCAGGAGAAGTCT
CAATTAATGCGAGAGCTTGCCAAGGACATGCAAAGTCATCTCCTATCCGGAAAAAGCTTTCACCAACAAGTAGCTGCCTA
TCCCTTTTTTAAAAAAGAGTTAGGGCTAATCATTGAATATGGCGATATGAAATCGAAACTGGGCTATGAATTAGAAGTCT
ATGCGCGTGAGAGTTGGTCTCGATTTTTTAGCCAATTACACCAAGCGACTCAACTGATACAACCGTTGATTTTTTTATTA
GTCGCTCTTATTATCGTTGTTATTTACGCTGCTATTTTATTACCAATTTATCAAAATATGGGGGATGTTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(31-147)

Type II secretion system (T2SS), protein F (T2SSF)

(217-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

50.888

98.256

0.5
  comYB Streptococcus mutans UA159

50.888

98.256

0.5
  comYB Streptococcus gordonii str. Challis substr. CH1

47.941

98.837

0.474
  comGB/cglB Streptococcus mitis SK321

48.649

96.802

0.471
  comGB/cglB Streptococcus mitis NCTC 12261

48.048

96.802

0.465
  comGB/cglB Streptococcus pneumoniae Rx1

46.847

96.802

0.453
  comGB/cglB Streptococcus pneumoniae D39

46.847

96.802

0.453
  comGB/cglB Streptococcus pneumoniae R6

46.847

96.802

0.453
  comGB/cglB Streptococcus pneumoniae TIGR4

46.847

96.802

0.453
  comGB Lactococcus lactis subsp. cremoris KW2

44.242

95.93

0.424

Multiple sequence alignment