Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STRIC_RS08555 Genome accession   NZ_AEUX02000007
Coordinates   169157..170110 (+) Length   317 a.a.
NCBI ID   WP_008089827.1    Uniprot ID   G5K4L4
Organism   Streptococcus ictaluri 707-05     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 164157..175110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRIC_RS08515 (STRIC_1743) - 165045..165410 (+) 366 WP_008090041.1 DUF1033 family protein -
  STRIC_RS08520 (STRIC_1744) comYA 165492..166436 (+) 945 WP_008089649.1 competence type IV pilus ATPase ComGA Machinery gene
  STRIC_RS08525 (STRIC_1745) comYB 166369..167403 (+) 1035 WP_050897398.1 competence type IV pilus assembly protein ComGB Machinery gene
  STRIC_RS08530 (STRIC_1746) comYC 167404..167730 (+) 327 WP_008090323.1 competence type IV pilus major pilin ComGC Machinery gene
  STRIC_RS08535 (STRIC_1747) comGD 167705..168133 (+) 429 WP_008090412.1 competence type IV pilus minor pilin ComGD -
  STRIC_RS08540 (STRIC_1748) comGE 168141..168380 (+) 240 WP_234944206.1 competence type IV pilus minor pilin ComGE -
  STRIC_RS08545 comYF 168340..168801 (+) 462 WP_050897399.1 competence type IV pilus minor pilin ComGF Machinery gene
  STRIC_RS08550 (STRIC_1750) comGG 168824..169108 (+) 285 WP_162097589.1 competence type IV pilus minor pilin ComGG -
  STRIC_RS08555 (STRIC_1751) comYH 169157..170110 (+) 954 WP_008089827.1 class I SAM-dependent methyltransferase Machinery gene
  STRIC_RS08560 (STRIC_1752) - 170167..171360 (+) 1194 WP_008089899.1 acetate kinase -
  STRIC_RS08565 (STRIC_1753) - 171504..171710 (+) 207 WP_008090214.1 helix-turn-helix transcriptional regulator -
  STRIC_RS08570 (STRIC_1754) - 171715..172167 (+) 453 WP_008090045.1 hypothetical protein -
  STRIC_RS08575 (STRIC_1755) - 172176..172856 (+) 681 WP_008090147.1 CPBP family intramembrane glutamic endopeptidase -
  STRIC_RS11600 (STRIC_1756) - 172929..173768 (+) 840 WP_008090293.1 hypothetical protein -
  STRIC_RS08585 (STRIC_1757) proC 173816..174586 (-) 771 WP_008090237.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35931.02 Da        Isoelectric Point: 5.5968

>NTDB_id=64586 STRIC_RS08555 WP_008089827.1 169157..170110(+) (comYH) [Streptococcus ictaluri 707-05]
MNFETIEKAYQLILENSQLIQNDLKTHFYDALIEHNSFYLGAPGASQQVAASIERLKALELTKEEWRRAYQFIFIKAGQT
EQLQANHQFTPDAIGFIILHILETLSHSDAIDLLEIGSGTGNLAQTILNNSQKTINYLGVEVDDLLIDLSASIAEIMESS
ARFIQEDAVRPQILKESDFILSDLPVGFYPNDAIAKRYQVASHEEHTYAHHLLMEQSLKYLKKGGYAVFLAPANLLTSSQ
SPLLKAWLKDYAQVAAVMTLPDNIFGNKSNVKSIVILQKQTETPTETFVYPIRDLKNRDNIRDFMQKLKKWKLDNAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=64586 STRIC_RS08555 WP_008089827.1 169157..170110(+) (comYH) [Streptococcus ictaluri 707-05]
ATGAATTTTGAAACTATTGAAAAAGCCTACCAGCTGATTTTAGAGAATAGTCAACTGATTCAAAATGACTTAAAAACGCA
CTTCTATGACGCCTTGATTGAGCACAACTCCTTTTACTTAGGAGCCCCAGGTGCTAGTCAACAAGTGGCAGCCAGTATTG
AGCGTTTAAAGGCATTAGAGTTGACTAAGGAGGAATGGCGTCGCGCCTACCAATTTATCTTTATCAAAGCTGGGCAAACT
GAACAATTACAAGCCAATCACCAGTTCACACCAGATGCGATTGGCTTTATTATTTTGCATATTTTGGAGACATTGAGTCA
TTCGGATGCTATAGATCTGTTAGAAATAGGTAGCGGTACAGGTAATTTAGCCCAAACCATTCTTAATAACTCTCAAAAAA
CAATTAATTATTTGGGGGTTGAGGTAGATGATCTTTTAATCGATTTGTCTGCTAGCATTGCTGAGATTATGGAGTCATCA
GCTCGCTTTATTCAAGAAGATGCCGTAAGACCGCAAATTTTGAAAGAAAGTGATTTCATTTTAAGTGATTTGCCAGTTGG
TTTTTATCCTAATGATGCTATTGCAAAGCGTTATCAGGTAGCTAGTCATGAGGAGCATACCTATGCACATCACCTGTTAA
TGGAGCAATCTCTCAAGTACCTTAAAAAAGGAGGTTACGCAGTGTTTTTAGCTCCAGCTAACTTGCTGACCAGTTCACAA
AGCCCACTCTTAAAGGCTTGGTTGAAGGATTATGCTCAGGTCGCTGCAGTTATGACTTTGCCGGATAATATTTTTGGAAA
TAAATCTAATGTTAAATCCATAGTAATCTTACAAAAGCAGACAGAAACCCCGACAGAAACCTTTGTTTATCCGATTAGAG
ACTTAAAAAATAGGGATAATATTCGGGATTTCATGCAAAAATTGAAAAAATGGAAACTCGATAATGCCATTTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K4L4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

63.291

99.685

0.631
  comYH Streptococcus mutans UA140

63.291

99.685

0.631

Multiple sequence alignment