Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   LPY96_RS06310 Genome accession   NZ_CP090568
Coordinates   1333524..1333952 (+) Length   142 a.a.
NCBI ID   WP_269340062.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain CFBP 2036     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1334624..1335586 1333524..1333952 flank 672


Gene organization within MGE regions


Location: 1333524..1335586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY96_RS06310 (LPY96_06315) comP 1333524..1333952 (+) 429 WP_269340062.1 pilin Machinery gene
  LPY96_RS06315 pilA2 1334049..1334462 (+) 414 WP_005921365.1 pilin Machinery gene
  LPY96_RS06320 (LPY96_06330) - 1334624..1335586 (+) 963 WP_005916682.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14543.67 Da        Isoelectric Point: 8.4798

>NTDB_id=643514 LPY96_RS06310 WP_269340062.1 1333524..1333952(+) (comP) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPTECRR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=643514 LPY96_RS06310 WP_269340062.1 1333524..1333952(+) (comP) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGAACCGTTTT
GACCTATGCTCCGACAGTGGGCGGTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCTACCGAGTGCCGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

54.305

100

0.577
  pilA2 Legionella pneumophila str. Paris

54.61

99.296

0.542
  pilA2 Legionella pneumophila strain ERS1305867

53.901

99.296

0.535
  pilA Ralstonia pseudosolanacearum GMI1000

40.854

100

0.472
  pilA Pseudomonas aeruginosa PAK

37.58

100

0.415
  pilA/pilA1 Eikenella corrodens VA1

39.073

100

0.415
  pilE Neisseria gonorrhoeae strain FA1090

34.94

100

0.408
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40.278

100

0.408
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.559

100

0.408
  pilA Haemophilus influenzae 86-028NP

38.519

95.07

0.366
  pilA Vibrio parahaemolyticus RIMD 2210633

40.31

90.845

0.366