Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   OFY20_RS03425 Genome accession   NZ_CP107524
Coordinates   597743..597922 (+) Length   59 a.a.
NCBI ID   WP_000965641.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SA5087     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 592743..602922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFY20_RS03380 (OFY20_03380) - 592939..593265 (+) 327 WP_000404431.1 DUF1366 domain-containing protein -
  OFY20_RS03385 (OFY20_03385) - 593240..593452 (+) 213 WP_000698337.1 hypothetical protein -
  OFY20_RS03390 (OFY20_03390) - 593465..593767 (+) 303 WP_000215499.1 hypothetical protein -
  OFY20_RS03395 (OFY20_03395) - 593769..594023 (+) 255 WP_000611524.1 phage holin -
  OFY20_RS03400 (OFY20_03400) - 594149..595480 (+) 1332 WP_000257237.1 GH25 family lysozyme -
  OFY20_RS03405 (OFY20_03405) - 595615..596511 (+) 897 WP_001061853.1 sensor histidine kinase -
  OFY20_RS03410 (OFY20_03410) - 596505..596804 (+) 300 WP_000258211.1 STAS-like domain-containing protein -
  OFY20_RS03415 (OFY20_03415) - 596914..597114 (+) 201 WP_000076712.1 CsbD family protein -
  OFY20_RS03420 (OFY20_03420) - 597155..597325 (-) 171 WP_000356856.1 hypothetical protein -
  OFY20_RS03425 (OFY20_03425) prx 597743..597922 (+) 180 WP_000965641.1 hypothetical protein Regulator
  OFY20_RS03430 (OFY20_03430) - 598022..598603 (-) 582 WP_153218837.1 site-specific integrase -
  OFY20_RS03435 (OFY20_03435) - 598639..598905 (-) 267 WP_001872365.1 hypothetical protein -
  OFY20_RS03440 (OFY20_03440) - 598911..600288 (+) 1378 Protein_595 IS3 family transposase -
  OFY20_RS03445 (OFY20_03445) - 600461..600622 (-) 162 WP_000508795.1 TM2 domain-containing protein -
  OFY20_RS03450 (OFY20_03450) - 601364..602641 (+) 1278 WP_000594360.1 ABC transporter permease -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6943.91 Da        Isoelectric Point: 4.4354

>NTDB_id=643514 OFY20_RS03425 WP_000965641.1 597743..597922(+) (prx) [Streptococcus agalactiae strain SA5087]
MLYIDEFKEAIDKGYISGNTVAIVRKNGKIFDYVLPHEEVRDDEVVTVERVEDVMRELR

Nucleotide


Download         Length: 180 bp        

>NTDB_id=643514 OFY20_RS03425 WP_000965641.1 597743..597922(+) (prx) [Streptococcus agalactiae strain SA5087]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGATAAAGGCTATATTTCAGGGAACACAGTAGCGATAGTGCGTAAAAA
CGGAAAGATATTTGATTATGTGTTGCCGCACGAGGAAGTGAGAGATGATGAAGTTGTGACAGTTGAGAGAGTGGAAGACG
TTATGAGAGAATTGAGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

74.138

98.305

0.729
  prx Streptococcus pyogenes MGAS8232

70.69

98.305

0.695
  prx Streptococcus pyogenes MGAS315

70.69

98.305

0.695
  prx Streptococcus pyogenes MGAS315

93.023

72.881

0.678
  prx Streptococcus pyogenes MGAS315

63.793

98.305

0.627
  prx Streptococcus pyogenes MGAS315

78.049

69.492

0.542
  prx Streptococcus pyogenes MGAS315

76.19

71.186

0.542