Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   LPY96_RS06315 Genome accession   NZ_CP090568
Coordinates   1334049..1334462 (+) Length   137 a.a.
NCBI ID   WP_005921365.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain CFBP 2036     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1334624..1335586 1334049..1334462 flank 162


Gene organization within MGE regions


Location: 1334049..1335586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPY96_RS06315 pilA2 1334049..1334462 (+) 414 WP_005921365.1 pilin Machinery gene
  LPY96_RS06320 (LPY96_06330) - 1334624..1335586 (+) 963 WP_005916682.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14164.27 Da        Isoelectric Point: 8.1169

>NTDB_id=643515 LPY96_RS06315 WP_005921365.1 1334049..1334462(+) (pilA2) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
MSRVNGFTLLELMIVVAIVGILSALALPAYQSYVIKARVTEAIILADSAKAAVTQNVNNENALTTTACAGVSGLSSPTKN
VASFTCQGAGVLTVVTTNVAGSVTLSLVPSYNSDRPVIWTCRHVSGSASYVPSDCRN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=643515 LPY96_RS06315 WP_005921365.1 1334049..1334462(+) (pilA2) [Xanthomonas citri pv. malvacearum strain CFBP 2036]
ATGAGCCGGGTAAACGGTTTCACCTTGCTCGAGCTAATGATCGTCGTGGCCATCGTCGGGATATTGTCTGCATTGGCCCT
GCCGGCTTATCAAAGTTATGTAATCAAGGCGCGCGTGACCGAAGCTATTATTTTGGCTGACTCTGCCAAAGCTGCGGTGA
CTCAGAATGTCAATAATGAAAATGCTTTGACAACTACTGCATGTGCGGGGGTGAGCGGGCTGTCGTCTCCCACTAAAAAT
GTAGCGTCTTTCACGTGCCAGGGCGCAGGAGTGCTGACTGTCGTTACGACCAACGTTGCAGGCTCGGTAACTCTGTCACT
TGTACCCAGCTACAACTCGGATCGTCCGGTAATCTGGACTTGCCGACATGTTTCTGGATCGGCTAGTTACGTGCCTTCAG
ATTGCCGAAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

49.265

99.27

0.489
  pilA Ralstonia pseudosolanacearum GMI1000

41.875

100

0.489
  pilA2 Legionella pneumophila strain ERS1305867

48.529

99.27

0.482
  comP Acinetobacter baylyi ADP1

41.611

100

0.453