Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   LOD78_RS09185 Genome accession   NZ_CP090522
Coordinates   1814100..1815050 (-) Length   316 a.a.
NCBI ID   WP_171989704.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1809100..1820050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS09150 (LOD78_09135) comYH 1810307..1811260 (-) 954 WP_274505423.1 class I SAM-dependent methyltransferase Machinery gene
  LOD78_RS09155 (LOD78_09140) comGG 1811280..1811780 (-) 501 WP_171989710.1 competence type IV pilus minor pilin ComGG -
  LOD78_RS09160 (LOD78_09145) comYF 1811758..1812192 (-) 435 WP_216806339.1 competence type IV pilus minor pilin ComGF Machinery gene
  LOD78_RS09165 (LOD78_09150) comGE 1812179..1812472 (-) 294 WP_105126461.1 competence type IV pilus minor pilin ComGE -
  LOD78_RS09170 (LOD78_09155) comGD 1812444..1812848 (-) 405 WP_171989707.1 competence type IV pilus minor pilin ComGD -
  LOD78_RS09175 (LOD78_09160) comYC 1812832..1813149 (-) 318 WP_274505424.1 competence type IV pilus major pilin ComGC Machinery gene
  LOD78_RS09180 (LOD78_09165) comYB 1813151..1814188 (-) 1038 WP_216806336.1 competence type IV pilus assembly protein ComGB Machinery gene
  LOD78_RS09185 (LOD78_09170) comYA 1814100..1815050 (-) 951 WP_171989704.1 competence type IV pilus ATPase ComGA Machinery gene
  LOD78_RS09190 (LOD78_09175) - 1815138..1816088 (+) 951 WP_274505425.1 S66 peptidase family protein -
  LOD78_RS09195 (LOD78_09180) - 1816121..1816489 (-) 369 WP_171989702.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35586.67 Da        Isoelectric Point: 5.7230

>NTDB_id=643202 LOD78_RS09185 WP_171989704.1 1814100..1815050(-) (comYA) [Streptococcus parasuis strain SS17]
MIQEKARKMIEEAVVERVSDIYLIPRGENYQVYHRIMDEREYIQELAEDEVMAIISHFKFLAGLNVGEKRRCQQGSCDYN
YVSGEISLRLSTVGDYRGKESLVIRLLYDQDQQLKFWFGALERIAQEIKGRGLYLFSGPVGSGKTTLMYQLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDSETARAVIRASLTGATVFSTVHARSVAGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSSDKWNEQIECLLAAGHISPRQAETEKIVLGSTA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=643202 LOD78_RS09185 WP_171989704.1 1814100..1815050(-) (comYA) [Streptococcus parasuis strain SS17]
ATGATTCAAGAAAAAGCAAGAAAAATGATTGAAGAGGCAGTTGTCGAAAGGGTCAGTGATATATATTTGATTCCAAGAGG
AGAAAACTACCAAGTCTATCATCGAATAATGGATGAACGGGAATATATTCAAGAATTAGCCGAGGATGAGGTGATGGCCA
TTATTAGCCATTTCAAGTTTTTAGCGGGTTTGAATGTCGGTGAAAAACGGCGTTGCCAGCAAGGCTCTTGTGACTACAAT
TATGTTTCAGGGGAGATTTCCCTTCGGTTATCAACGGTTGGTGATTATCGTGGTAAAGAAAGTTTGGTCATTCGTCTGCT
CTATGATCAAGATCAACAACTTAAATTTTGGTTTGGAGCATTGGAGAGGATTGCTCAAGAAATCAAGGGACGAGGGCTCT
ATCTTTTTTCAGGGCCTGTCGGTTCTGGCAAGACTACACTCATGTACCAGCTGGCGAGATTGAAATTTCCAGATAAGCAA
ATTCTAACTATAGAAGATCCAGTGGAAATCAAGCAGGAAGATATGCTCCAACTCCAGCTCAATGAGGCAATTGGTGCTAC
CTATGATAATCTCATCAAACTATCACTTCGTCATCGACCAGATTTACTGATTATTGGAGAAATTCGAGATTCAGAAACTG
CTCGGGCAGTAATACGAGCTAGTTTGACAGGGGCAACGGTCTTCTCAACGGTTCATGCTAGAAGTGTTGCTGGTGTCTAT
GCTCGCATGTTAGAACTGGGTGTAAGTCCTGAAGAATTGAATAATGCTCTTCAAGGAATTGCCTATCAACGATTAATAGG
GGGAGGAGGTGTTGTTGATTTTGCAAAAGGAAACTACCAAAACCATTCCTCGGACAAGTGGAATGAGCAAATTGAATGCC
TTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.387

98.101

0.671
  comYA Streptococcus mutans UA159

67.846

98.418

0.668
  comYA Streptococcus mutans UA140

67.846

98.418

0.668
  comGA/cglA/cilD Streptococcus pneumoniae D39

65.161

98.101

0.639
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

65.161

98.101

0.639
  comGA/cglA/cilD Streptococcus pneumoniae R6

65.161

98.101

0.639
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

65.161

98.101

0.639
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.839

98.101

0.636
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.516

98.101

0.633
  comGA Lactococcus lactis subsp. cremoris KW2

54.89

100

0.551
  comGA Latilactobacillus sakei subsp. sakei 23K

41.877

87.658

0.367