Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   LOD78_RS09150 Genome accession   NZ_CP090522
Coordinates   1810307..1811260 (-) Length   317 a.a.
NCBI ID   WP_274505423.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1805307..1816260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS09125 (LOD78_09110) - 1805350..1805634 (-) 285 WP_274505422.1 DUF4651 domain-containing protein -
  LOD78_RS09130 (LOD78_09115) pepA 1805847..1806908 (+) 1062 WP_216806344.1 glutamyl aminopeptidase -
  LOD78_RS09135 (LOD78_09120) - 1806953..1808209 (-) 1257 WP_216806343.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LOD78_RS09140 (LOD78_09125) - 1808264..1808815 (-) 552 WP_216806342.1 folate family ECF transporter S component -
  LOD78_RS09145 (LOD78_09130) - 1809070..1810257 (-) 1188 WP_239604301.1 acetate kinase -
  LOD78_RS09150 (LOD78_09135) comYH 1810307..1811260 (-) 954 WP_274505423.1 class I SAM-dependent methyltransferase Machinery gene
  LOD78_RS09155 (LOD78_09140) comGG 1811280..1811780 (-) 501 WP_171989710.1 competence type IV pilus minor pilin ComGG -
  LOD78_RS09160 (LOD78_09145) comYF 1811758..1812192 (-) 435 WP_216806339.1 competence type IV pilus minor pilin ComGF Machinery gene
  LOD78_RS09165 (LOD78_09150) comGE 1812179..1812472 (-) 294 WP_105126461.1 competence type IV pilus minor pilin ComGE -
  LOD78_RS09170 (LOD78_09155) comGD 1812444..1812848 (-) 405 WP_171989707.1 competence type IV pilus minor pilin ComGD -
  LOD78_RS09175 (LOD78_09160) comYC 1812832..1813149 (-) 318 WP_274505424.1 competence type IV pilus major pilin ComGC Machinery gene
  LOD78_RS09180 (LOD78_09165) comYB 1813151..1814188 (-) 1038 WP_216806336.1 competence type IV pilus assembly protein ComGB Machinery gene
  LOD78_RS09185 (LOD78_09170) comYA 1814100..1815050 (-) 951 WP_171989704.1 competence type IV pilus ATPase ComGA Machinery gene
  LOD78_RS09190 (LOD78_09175) - 1815138..1816088 (+) 951 WP_274505425.1 S66 peptidase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35638.85 Da        Isoelectric Point: 4.5696

>NTDB_id=643198 LOD78_RS09150 WP_274505423.1 1810307..1811260(-) (comYH) [Streptococcus parasuis strain SS17]
MKYEKIEQAYNLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETELVLNNNQILRELALTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVTTPRVTVLEIGSGTGNLAQTILNASQKELDYLGIEIDDLLIDLSASIADVMGAA
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=643198 LOD78_RS09150 WP_274505423.1 1810307..1811260(-) (comYH) [Streptococcus parasuis strain SS17]
ATGAAATATGAAAAAATTGAACAGGCCTACAACCTGCTTTTAGAAAATGTACAGACAATTCAAAATCAACTTGGGACCAA
TATTTATGATGCTATGATTGAGCAAAATGCTGCCTATGTAGCTGGTCAACATGAAACCGAACTTGTTCTCAACAACAATC
AAATCTTGAGAGAATTAGCCTTGACAAAGGAAGAATGGCGTCGTGCTTACCAATTCTTGCTCATTAAAGCTAACCAGACA
GAACCGATGCAGTACAACCATCAGTTCACACCTGACTCTATCGGATTTATTTTATCTTTCCTTGTGGACCAGTTGGTCAC
TACTCCAAGAGTAACGGTTTTGGAAATTGGTTCTGGTACAGGAAACTTAGCTCAGACCATTCTCAACGCCAGCCAGAAGG
AATTAGACTATTTAGGGATTGAAATAGATGACCTCTTGATTGATTTATCGGCTAGTATCGCGGATGTCATGGGAGCAGCT
ATTTCATTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAAGAAAGCCAAGTGATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTAGCTAGTCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAGTCCCTCAAATATCTGGAAAAAGATGGATTTGCGATTTTACTGGCTCCAAATGATTTATTAACGAGTCCGCAA
AGCGATTTATTAAAAGGTTGGTTACAAGAACAAGCCAATATTGTTGCCATGATTGCCCTGCCGCCAAATCTTTTTGGGAA
GGCTGCCATGGCCAAGTCCATTTTTGTGTTACAAAAGAAAGCTGCCAGACCTTTAACTCCTTTCGTTTATCCTTTGCAAA
GCCTGCAAGAACCAGAAGCGATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

59.494

99.685

0.593
  comYH Streptococcus mutans UA159

59.177

99.685

0.59