Detailed information NTG0643201

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: LOD78_RS09180
• Genome accession: NZ_CP090522
• Coordinates: 1813151..1814188 (-)
• Length: 345 a.a.
• NCBI ID: WP_216806336.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SS17
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1808151..1819188

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOD78_RS09140 (LOD78_09125)	-	1808264..1808815 (-)	552	WP_216806342.1	folate family ECF transporter S component	-
LOD78_RS09145 (LOD78_09130)	-	1809070..1810257 (-)	1188	WP_239604301.1	acetate kinase	-
LOD78_RS09150 (LOD78_09135)	comYH	1810307..1811260 (-)	954	WP_274505423.1	class I SAM-dependent methyltransferase	Machinery gene
LOD78_RS09155 (LOD78_09140)	comGG	1811280..1811780 (-)	501	WP_171989710.1	competence type IV pilus minor pilin ComGG	-
LOD78_RS09160 (LOD78_09145)	comYF	1811758..1812192 (-)	435	WP_216806339.1	competence type IV pilus minor pilin ComGF	Machinery gene
LOD78_RS09165 (LOD78_09150)	comGE	1812179..1812472 (-)	294	WP_105126461.1	competence type IV pilus minor pilin ComGE	-
LOD78_RS09170 (LOD78_09155)	comGD	1812444..1812848 (-)	405	WP_171989707.1	competence type IV pilus minor pilin ComGD	-
LOD78_RS09175 (LOD78_09160)	comYC	1812832..1813149 (-)	318	WP_274505424.1	competence type IV pilus major pilin ComGC	Machinery gene
LOD78_RS09180 (LOD78_09165)	comYB	1813151..1814188 (-)	1038	WP_216806336.1	competence type IV pilus assembly protein ComGB	Machinery gene
LOD78_RS09185 (LOD78_09170)	comYA	1814100..1815050 (-)	951	WP_171989704.1	competence type IV pilus ATPase ComGA	Machinery gene
LOD78_RS09190 (LOD78_09175)	-	1815138..1816088 (+)	951	WP_274505425.1	S66 peptidase family protein	-
LOD78_RS09195 (LOD78_09180)	-	1816121..1816489 (-)	369	WP_171989702.1	DUF1033 family protein	-

Sequence

Protein

• Length: 345 a.a.
• Molecular weight: 39272.27 Da
• Isoelectric Point: 9.4587

>NTDB_id=643201 LOD78_RS09180 WP_216806336.1 1813151..1814188(-) (comYB) [Streptococcus parasuis strain SS17]
MSKLNAFLQRDISVLGRQKQKKLSLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADQYTQVLSDGLLAGKPFSSLL
GDLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLAFLLLIMLGLKNYLLPQLEEGNVATI
LIQHLPTIFLSFCGLFFLAVLGGLIWYRRTNKIKAFSRLVALPFFGKLIQTYLTAYYAREWGSLIGQGLDMPQIVGLMQE
QKSQLFREIGEDLERSLSDGHSFHAHIQTYGFFKRELSLMIEYGQVKSKLGSELSVYATECWEEFFTRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide

• Length: 1038 bp

>NTDB_id=643201 LOD78_RS09180 WP_216806336.1 1813151..1814188(-) (comYB) [Streptococcus parasuis strain SS17]
ATGAGCAAATTGAATGCCTTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCG
ACAGCGTAAGGTGATTGAGCTCTTTAACAATCTTTTTGCTAGTGGATTTCACTTGGGAGAAATTGTCGATTTTCTCAAAC
GGAGTCAACTCTTGGCTGATCAATACACGCAAGTTTTGTCCGATGGTCTTCTTGCAGGAAAGCCATTTTCAAGTCTTTTG
GGAGATTTACGCTTTTCGGATGCTGTTGTCACCCAGGTGGCCTTGGCGGAGGTTCATGGCAATACCAGTCTGAGTCTAAG
TCATATTCAATCTTATCTTGAAAATGTTAGCAAGGTGCGTAAAAAATTGATAGAAGTAGCAACCTATCCAATCATCTTGC
TTGCCTTTTTATTATTGATAATGTTGGGACTAAAAAACTATTTGTTGCCCCAGTTGGAAGAAGGAAATGTTGCGACTATA
TTGATTCAACACTTGCCAACAATCTTTTTATCCTTTTGTGGCCTTTTCTTTCTTGCTGTCTTAGGTGGGCTTATTTGGTA
TCGCAGAACAAATAAAATCAAGGCTTTTTCTCGCTTAGTAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATTTGA
CCGCCTATTACGCGAGGGAATGGGGAAGCTTGATTGGTCAGGGACTTGATATGCCTCAGATTGTGGGCTTGATGCAGGAA
CAAAAATCACAGCTTTTTCGTGAGATTGGTGAGGATTTAGAGCGTTCGCTTTCTGATGGGCATAGTTTCCATGCTCATAT
CCAAACGTATGGCTTTTTCAAACGGGAGCTGAGTCTAATGATTGAGTATGGGCAAGTCAAATCAAAATTAGGAAGTGAGC
TATCTGTGTATGCAACAGAGTGTTGGGAGGAATTTTTTACTCGCGTTAATAGGGCCATGCAGTTGATTCAACCATTGGTT
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTATGCAGCCATGTTGCTGCCAATTTATCAGAATATGGAGTTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (33-150)

• Type II secretion system (T2SS), protein F (T2SSF) (218-338)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus gordonii str. Challis substr. CH1	60.588	98.551	0.597
comYB	Streptococcus mutans UA140	60	98.551	0.591
comYB	Streptococcus mutans UA159	60	98.551	0.591
comGB/cglB	Streptococcus mitis SK321	60	97.101	0.583
comGB/cglB	Streptococcus mitis NCTC 12261	59.701	97.101	0.58
comGB/cglB	Streptococcus pneumoniae Rx1	59.104	97.101	0.574
comGB/cglB	Streptococcus pneumoniae D39	59.104	97.101	0.574
comGB/cglB	Streptococcus pneumoniae R6	59.104	97.101	0.574
comGB/cglB	Streptococcus pneumoniae TIGR4	59.104	97.101	0.574
comGB	Lactococcus lactis subsp. cremoris KW2	51.335	97.681	0.501