Detailed information NTG0643199

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: LOD78_RS09160
• Genome accession: NZ_CP090522
• Coordinates: 1811758..1812192 (-)
• Length: 144 a.a.
• NCBI ID: WP_216806339.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain SS17
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1806758..1817192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOD78_RS09135 (LOD78_09120)	-	1806953..1808209 (-)	1257	WP_216806343.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
LOD78_RS09140 (LOD78_09125)	-	1808264..1808815 (-)	552	WP_216806342.1	folate family ECF transporter S component	-
LOD78_RS09145 (LOD78_09130)	-	1809070..1810257 (-)	1188	WP_239604301.1	acetate kinase	-
LOD78_RS09150 (LOD78_09135)	comYH	1810307..1811260 (-)	954	WP_274505423.1	class I SAM-dependent methyltransferase	Machinery gene
LOD78_RS09155 (LOD78_09140)	comGG	1811280..1811780 (-)	501	WP_171989710.1	competence type IV pilus minor pilin ComGG	-
LOD78_RS09160 (LOD78_09145)	comYF	1811758..1812192 (-)	435	WP_216806339.1	competence type IV pilus minor pilin ComGF	Machinery gene
LOD78_RS09165 (LOD78_09150)	comGE	1812179..1812472 (-)	294	WP_105126461.1	competence type IV pilus minor pilin ComGE	-
LOD78_RS09170 (LOD78_09155)	comGD	1812444..1812848 (-)	405	WP_171989707.1	competence type IV pilus minor pilin ComGD	-
LOD78_RS09175 (LOD78_09160)	comYC	1812832..1813149 (-)	318	WP_274505424.1	competence type IV pilus major pilin ComGC	Machinery gene
LOD78_RS09180 (LOD78_09165)	comYB	1813151..1814188 (-)	1038	WP_216806336.1	competence type IV pilus assembly protein ComGB	Machinery gene
LOD78_RS09185 (LOD78_09170)	comYA	1814100..1815050 (-)	951	WP_171989704.1	competence type IV pilus ATPase ComGA	Machinery gene
LOD78_RS09190 (LOD78_09175)	-	1815138..1816088 (+)	951	WP_274505425.1	S66 peptidase family protein	-
LOD78_RS09195 (LOD78_09180)	-	1816121..1816489 (-)	369	WP_171989702.1	DUF1033 family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16450.86 Da
• Isoelectric Point: 7.1334

>NTDB_id=643199 LOD78_RS09160 WP_216806339.1 1811758..1812192(-) (comYF) [Streptococcus parasuis strain SS17]
MRKTKLAAFTLLECLIALLIISGSLLVIEGLSKLIAHEVRYQERHVEKQWLLFCDQLRAEWEGASLDRVDSGKLYLTKGE
KSLAFGKSVADDFRKTNANGQGYQPMLYKVYSATYAQQGEVIQLDVTFESGEERSFRYVFEKTN

Nucleotide

• Length: 435 bp

>NTDB_id=643199 LOD78_RS09160 WP_216806339.1 1811758..1812192(-) (comYF) [Streptococcus parasuis strain SS17]
TTGAGAAAAACTAAGTTAGCCGCGTTCACCCTCTTGGAATGTTTAATTGCCTTACTCATTATTTCTGGCAGCTTGCTAGT
GATTGAAGGTTTATCAAAATTGATAGCGCATGAGGTTCGCTATCAAGAGCGTCATGTGGAAAAACAGTGGTTACTATTTT
GTGATCAATTGCGGGCTGAATGGGAAGGAGCAAGTCTTGATCGGGTTGATTCTGGAAAGTTGTACCTAACCAAAGGGGAA
AAATCATTGGCATTTGGCAAGTCTGTGGCAGATGATTTTCGCAAGACAAATGCAAATGGTCAGGGCTATCAGCCCATGTT
GTACAAAGTTTATTCAGCTACTTACGCCCAACAAGGCGAGGTTATACAGCTGGATGTAACATTTGAAAGTGGGGAGGAAA
GGAGTTTTAGGTATGTTTTTGAAAAGACGAATTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA159	54.167	100	0.542
comYF	Streptococcus mutans UA140	54.167	100	0.542
comGF	Lactococcus lactis subsp. cremoris KW2	48.227	97.917	0.472
comGF/cglF	Streptococcus mitis NCTC 12261	47.143	97.222	0.458
comGF/cglF	Streptococcus pneumoniae Rx1	45.652	95.833	0.437
comGF/cglF	Streptococcus pneumoniae D39	45.652	95.833	0.437
comGF/cglF	Streptococcus pneumoniae R6	45.652	95.833	0.437
comGF/cglF	Streptococcus pneumoniae TIGR4	45.652	95.833	0.437
comGF/cglF	Streptococcus mitis SK321	44.604	96.528	0.431