Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | IHC89_RS04480 | Genome accession | NZ_CP090495 |
| Coordinates | 881605..881865 (+) | Length | 86 a.a. |
| NCBI ID | WP_237031636.1 | Uniprot ID | - |
| Organism | Photobacterium damselae subsp. damselae strain AS-15-0759-2 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 876605..886865
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHC89_RS04470 (IHC89_04470) | hupB | 878894..879166 (+) | 273 | WP_005298263.1 | nucleoid-associated protein HU-beta | - |
| IHC89_RS04475 (IHC89_04475) | ppiD | 879517..881415 (+) | 1899 | WP_106339073.1 | peptidylprolyl isomerase | - |
| IHC89_RS04480 (IHC89_04480) | comEA | 881605..881865 (+) | 261 | WP_237031636.1 | ComEA family DNA-binding protein | Machinery gene |
| IHC89_RS04485 (IHC89_04485) | - | 881950..882288 (-) | 339 | WP_068947005.1 | DUF1971 domain-containing protein | - |
| IHC89_RS04490 (IHC89_04490) | rrtA | 882375..882932 (-) | 558 | WP_106339069.1 | rhombosortase | - |
| IHC89_RS04495 (IHC89_04495) | - | 882942..883562 (+) | 621 | WP_237031456.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| IHC89_RS04500 (IHC89_04500) | - | 883676..885004 (-) | 1329 | WP_237031457.1 | anti-phage deoxyguanosine triphosphatase | - |
| IHC89_RS04505 (IHC89_04505) | yfbR | 885004..885588 (-) | 585 | WP_068947009.1 | 5'-deoxynucleotidase | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9495.98 Da Isoelectric Point: 5.1351
>NTDB_id=642909 IHC89_RS04480 WP_237031636.1 881605..881865(+) (comEA) [Photobacterium damselae subsp. damselae strain AS-15-0759-2]
MALAILLTPLVYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MALAILLTPLVYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=642909 IHC89_RS04480 WP_237031636.1 881605..881865(+) (comEA) [Photobacterium damselae subsp. damselae strain AS-15-0759-2]
ATGGCATTAGCAATACTACTTACCCCGTTAGTTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATTCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGCATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
ATGGCATTAGCAATACTACTTACCCCGTTAGTTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGCCCAGATAAGGCTGAAAATATTATTCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGCATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.118 |
98.837 |
0.535 |
| comEA | Vibrio campbellii strain DS40M4 |
53.488 |
100 |
0.535 |
| comEA | Vibrio cholerae strain A1552 |
57.353 |
79.07 |
0.453 |
| comEA | Vibrio cholerae C6706 |
57.353 |
79.07 |
0.453 |
| comEA | Acinetobacter baylyi ADP1 |
57.812 |
74.419 |
0.43 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
40.698 |
100 |
0.407 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.667 |
69.767 |
0.395 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.738 |
70.93 |
0.395 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.613 |
72.093 |
0.372 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
49.206 |
73.256 |
0.36 |