Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LLE35_RS01800 Genome accession   NZ_CP106773
Coordinates   345824..346954 (+) Length   376 a.a.
NCBI ID   WP_317629398.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10562     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340824..351954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE35_RS01775 (LLE35_01765) - 341270..341419 (+) 150 WP_003687747.1 hypothetical protein -
  LLE35_RS01780 (LLE35_01770) - 341643..341750 (+) 108 Protein_350 IS5/IS1182 family transposase -
  LLE35_RS01785 (LLE35_01775) lepB 341855..342874 (-) 1020 WP_003687750.1 signal peptidase I -
  LLE35_RS01790 (LLE35_01780) lepA 343020..344813 (-) 1794 WP_003699573.1 translation elongation factor 4 -
  LLE35_RS01795 (LLE35_01785) - 344955..345656 (-) 702 WP_003699575.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  LLE35_RS01800 (LLE35_01790) pilU 345824..346954 (+) 1131 WP_317629398.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LLE35_RS01805 (LLE35_01795) - 346988..347965 (+) 978 WP_229931483.1 DNA polymerase III subunit delta' -
  LLE35_RS01810 (LLE35_01800) - 347969..348319 (+) 351 WP_003687757.1 PilZ domain-containing protein -
  LLE35_RS01815 (LLE35_01805) - 348324..349103 (+) 780 WP_003690796.1 TatD family hydrolase -
  LLE35_RS01820 (LLE35_01810) - 349129..349344 (+) 216 WP_003690799.1 DUF333 domain-containing protein -
  LLE35_RS01825 (LLE35_01815) grxD 349445..349756 (+) 312 WP_003687762.1 Grx4 family monothiol glutaredoxin -
  LLE35_RS01830 (LLE35_01820) upp 349862..350488 (+) 627 WP_003690802.1 uracil phosphoribosyltransferase -
  LLE35_RS01835 (LLE35_01825) - 350511..350831 (+) 321 WP_003690805.1 DUF2322 family protein -
  LLE35_RS01840 (LLE35_01830) - 351000..351641 (+) 642 Protein_362 IS1595 family transposase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42243.37 Da        Isoelectric Point: 6.2891

>NTDB_id=636764 LLE35_RS01800 WP_317629398.1 345824..346954(+) (pilU) [Neisseria gonorrhoeae strain 10562]
MFTDENMTAKEELFAWLRHMNKNKGSDLFVTTHFPPAMKLDGKITRITDEPLTAEKCMEIAFSIMSAKQAEEFSSTNECN
FAISLPDTSRFRVNAMIQRGATALVFRAITSKIPKFESLNLPPALKDVALKKRGLVIFVGGTGSGKSTSLASLIDYRNEN
SFGHIITIEDPIEFVHEHKNCIITQREVGVDTENWMAALKNTLRQAPDVILIGEIRDRETMDYAIAFAETGHLCMATLHA
NSTNQALDRIINFFPEERREQLLTDLSLNLQAFISQRLVPRDGGKGRVVAVEVLLNSPLISELIHNGNIHEIKEVMKKST
TLGMQTFDQHLYQLYEKGEISLQDALKNADSAHDLRLAVQLRSRRAQSSDPDLELL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=636764 LLE35_RS01800 WP_317629398.1 345824..346954(+) (pilU) [Neisseria gonorrhoeae strain 10562]
ATGTTTACCGATGAAAATATGACTGCAAAGGAAGAACTGTTCGCATGGCTGCGCCATATGAACAAAAACAAAGGTTCCGA
CCTGTTTGTGACGACCCATTTCCCGCCCGCTATGAAGCTGGACGGCAAAATCACCCGCATCACGGACGAACCGCTGACGG
CGGAAAAATGTATGGAAATCGCCTTTTCGATTATGAGTGCGAAGCAGGCGGAAGAATTTTCATCGACCAACGAGTGCAAC
TTCGCCATCAGCCTGCCGGACACCAGCCGCTTCCGCGTCAATGCGATGATACAGCGCGGTGCGACGGCGTTGGTATTCCG
CGCGATTACCAGCAAGATTCCCAAGTTTGAAAGCCTGAACCTGCCGCCGGCCTTGAAGGATGTTGCGCTGAAAAAACGCG
GGCTGGTTATTTTTGTCGGCGGCACCGGCTCGGGCAAATCGACTTCGCTCGCCTCGCTTATCGACTACCGCAATGAAAAT
TCGTTCGGACACATCATCACCATCGAAGATCCGATCGAGTTTGTCCACGAACACAAAAACTGCATCATTACCCAGCGCGA
GGTCGGCGTGGACACGGAAAACTGGATGGCGGCGTTGAAAAATACGCTGCGTCAGGCGCCGGATGTGATCCTTATCGGCG
AAATCCGCGACCGTGAAACAATGGACTACGCCATCGCCTTTGCCGAAACGGGGCATTTGTGTATGGCGACGCTGCACGCC
AACAGCACCAATCAGGCGCTCGACCGCATCATCAACTTCTTCCCCGAGGAGCGGCGCGAACAATTGCTGACGGATTTGTC
GCTCAACCTTCAGGCGTTTATTTCGCAACGCCTCGTTCCGCGAGACGGCGGCAAGGGCAGGGTGGTGGCAGTCGAGGTAC
TGCTCAATTCGCCCCTGATTTCGGAGTTGATTCACAACGGCAACATCCATGAAATCAAAGAAGTGATGAAAAAATCCACT
ACCCTGGGTATGCAGACCTTCGACCAACACCTTTACCAATTGTATGAAAAAGGCGAGATTTCCTTGCAGGATGCCTTGAA
AAATGCCGATTCCGCACATGATTTGCGTTTGGCGGTACAGTTGCGCAGCCGCAGGGCACAAAGTTCCGACCCCGATTTGG
AACTGCTCTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(87-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

59.375

93.617

0.556
  pilU Acinetobacter baylyi ADP1

57.434

91.223

0.524
  pilU Vibrio cholerae strain A1552

54.366

94.415

0.513
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.343

93.883

0.407
  pilT Legionella pneumophila strain Lp02

43.519

86.17

0.375
  pilT Legionella pneumophila strain ERS1305867

43.519

86.17

0.375
  pilT Acinetobacter baylyi ADP1

42.424

87.766

0.372
  pilT Acinetobacter nosocomialis M2

42.593

86.17

0.367
  pilT Acinetobacter baumannii D1279779

42.593

86.17

0.367
  pilT Acinetobacter baumannii strain A118

42.593

86.17

0.367
  pilT Pseudomonas aeruginosa PAK

42.073

87.234

0.367
  pilT Neisseria meningitidis 8013

40.597

89.096

0.362