Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   N5877_RS20740 Genome accession   NZ_CP104586
Coordinates   4476165..4476638 (+) Length   157 a.a.
NCBI ID   WP_015503553.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain WTJH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4471165..4481638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5877_RS20715 (N5877_20715) yacG 4471333..4471533 (-) 201 WP_003094656.1 DNA gyrase inhibitor YacG -
  N5877_RS20720 (N5877_20720) coaE 4471530..4472141 (-) 612 WP_003112838.1 dephospho-CoA kinase -
  N5877_RS20725 (N5877_20725) pilD 4472138..4473010 (-) 873 WP_019726811.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  N5877_RS20730 (N5877_20730) pilC 4473013..4474230 (-) 1218 WP_010792214.1 type II secretion system F family protein Machinery gene
  N5877_RS20735 (N5877_20735) pilB 4474234..4475934 (-) 1701 WP_003120945.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N5877_RS20740 (N5877_20740) pilE 4476165..4476638 (+) 474 WP_015503553.1 pilin Machinery gene
  N5877_RS20750 (N5877_20750) nadC 4476791..4477639 (-) 849 WP_003116246.1 carboxylating nicotinate-nucleotide diphosphorylase -
  N5877_RS20755 (N5877_20755) - 4477925..4480180 (+) 2256 WP_019726810.1 DUF1631 domain-containing protein -
  N5877_RS20760 (N5877_20760) ampD 4480331..4480897 (+) 567 WP_009875882.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16090.45 Da        Isoelectric Point: 8.4684

>NTDB_id=631207 N5877_RS20740 WP_015503553.1 4476165..4476638(+) (pilE) [Pseudomonas aeruginosa strain WTJH6]
MKAAQKGFTLIELMIVVAIIGILAAIAIPAYQDYTARAQLSEAMTLASGLKTKVSDIFSQDGSCPANTAATAGIEKDTDI
NGKYVAKVTTGGTAAASGGCTIVATMKASDVATPLRGKTLTLTLGNADKGSYTWACTSNADNKYLPKTCQTATTTTP

Nucleotide


Download         Length: 474 bp        

>NTDB_id=631207 N5877_RS20740 WP_015503553.1 4476165..4476638(+) (pilE) [Pseudomonas aeruginosa strain WTJH6]
ATGAAAGCTGCTCAAAAAGGCTTTACCTTGATCGAATTGATGATCGTGGTCGCGATCATCGGTATTCTGGCTGCCATCGC
TATTCCAGCGTATCAGGACTACACCGCACGCGCTCAGCTTAGCGAAGCCATGACCCTGGCCAGTGGTCTCAAGACGAAAG
TGAGCGATATCTTCTCTCAGGATGGGTCCTGCCCGGCTAATACTGCTGCCACGGCAGGCATCGAGAAAGATACCGACATC
AACGGCAAGTATGTTGCCAAGGTAACAACTGGTGGCACCGCAGCTGCGTCTGGTGGTTGCACTATCGTTGCTACTATGAA
AGCCTCTGATGTGGCTACTCCTCTGAGGGGGAAAACTCTGACTTTGACTCTAGGAAATGCTGACAAGGGTTCTTACACTT
GGGCCTGTACTTCCAACGCAGATAACAAGTACCTGCCAAAAACCTGCCAGACTGCTACCACTACCACTCCGTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(36-150)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

42.197

100

0.465
  comP Acinetobacter baylyi ADP1

47.059

97.452

0.459
  pilE Neisseria gonorrhoeae MS11

42.515

100

0.452
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

41.176

100

0.446
  pilA/pilA1 Eikenella corrodens VA1

41.975

100

0.433
  pilA2 Legionella pneumophila str. Paris

45.578

93.631

0.427
  pilA2 Legionella pneumophila strain ERS1305867

44.218

93.631

0.414
  pilA Ralstonia pseudosolanacearum GMI1000

39.394

100

0.414
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.333

95.541

0.414
  pilA Pseudomonas aeruginosa PAK

41.722

96.178

0.401
  pilA Acinetobacter nosocomialis M2

55.357

71.338

0.395