Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   LCH97_RS10870 Genome accession   NZ_CP085530
Coordinates   2271717..2272184 (-) Length   155 a.a.
NCBI ID   WP_227301700.1    Uniprot ID   -
Organism   Vogesella sp. XCS3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2266717..2277184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH97_RS10855 (LCH97_10855) rpoH 2267054..2267914 (+) 861 WP_227301697.1 RNA polymerase sigma factor RpoH -
  LCH97_RS10860 (LCH97_10860) - 2268013..2269776 (-) 1764 WP_227301698.1 PglL family O-oligosaccharyltransferase -
  LCH97_RS10865 (LCH97_10865) - 2269844..2271655 (-) 1812 WP_227301699.1 PglL family O-oligosaccharyltransferase -
  LCH97_RS10870 (LCH97_10870) pilA2 2271717..2272184 (-) 468 WP_227301700.1 pilin Machinery gene
  LCH97_RS10875 (LCH97_10875) pilE 2272238..2272705 (-) 468 WP_227301701.1 pilin Machinery gene
  LCH97_RS18795 pilE 2272759..2273193 (-) 435 WP_304956710.1 pilin Machinery gene
  LCH97_RS10890 (LCH97_10890) bioA 2273505..2274794 (+) 1290 WP_255619203.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  LCH97_RS10895 (LCH97_10895) - 2274915..2276477 (+) 1563 WP_227301703.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16170.48 Da        Isoelectric Point: 8.9439

>NTDB_id=618863 LCH97_RS10870 WP_227301700.1 2271717..2272184(-) (pilA2) [Vogesella sp. XCS3]
MKRVQQGFTLIELMIVVAIIGILAAIAIPAYQDYTKRAHVSEGLTLAAAAKTAVTEYYATNNAFVTGTAPLNASYGVATN
TDIKGNAVDKVSVLASGVVQITYNAKVTSGSAIWLNPTINNGSLQWTCASAPTTGVTKLDSAANVDAKYVPSNCR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=618863 LCH97_RS10870 WP_227301700.1 2271717..2272184(-) (pilA2) [Vogesella sp. XCS3]
ATGAAACGTGTACAACAGGGCTTTACCCTGATCGAACTGATGATTGTTGTAGCTATTATCGGTATCCTGGCTGCTATCGC
TATCCCGGCTTATCAGGACTACACCAAGCGGGCTCACGTCTCGGAAGGTTTGACACTGGCAGCAGCGGCAAAGACTGCCG
TGACTGAGTACTACGCTACTAATAATGCATTTGTTACAGGTACTGCTCCGCTTAATGCTTCATACGGTGTGGCAACAAAT
ACTGATATCAAAGGTAATGCGGTTGATAAAGTGTCTGTACTTGCTAGTGGTGTAGTGCAGATTACCTATAATGCTAAAGT
AACCAGCGGTTCTGCAATTTGGCTGAACCCAACTATTAATAACGGATCCCTGCAATGGACATGCGCTTCTGCACCAACAA
CTGGTGTTACCAAGCTGGATTCTGCTGCAAACGTTGACGCCAAATACGTACCGTCCAACTGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

51.316

98.065

0.503
  pilA2 Legionella pneumophila str. Paris

51.316

98.065

0.503
  pilE Neisseria gonorrhoeae strain FA1090

45.122

100

0.477
  pilE Neisseria gonorrhoeae MS11

44.848

100

0.477
  pilA Ralstonia pseudosolanacearum GMI1000

41.667

100

0.452
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

36.316

100

0.445
  comP Acinetobacter baylyi ADP1

43.59

100

0.439
  pilA/pilA1 Eikenella corrodens VA1

37.888

100

0.394
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.179

100

0.374
  pilA Pseudomonas aeruginosa PAK

34.356

100

0.361