Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LCH97_RS10875 Genome accession   NZ_CP085530
Coordinates   2272238..2272705 (-) Length   155 a.a.
NCBI ID   WP_227301701.1    Uniprot ID   -
Organism   Vogesella sp. XCS3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2267238..2277705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH97_RS10860 (LCH97_10860) - 2268013..2269776 (-) 1764 WP_227301698.1 PglL family O-oligosaccharyltransferase -
  LCH97_RS10865 (LCH97_10865) - 2269844..2271655 (-) 1812 WP_227301699.1 PglL family O-oligosaccharyltransferase -
  LCH97_RS10870 (LCH97_10870) pilA2 2271717..2272184 (-) 468 WP_227301700.1 pilin Machinery gene
  LCH97_RS10875 (LCH97_10875) pilE 2272238..2272705 (-) 468 WP_227301701.1 pilin Machinery gene
  LCH97_RS18795 pilE 2272759..2273193 (-) 435 WP_304956710.1 pilin Machinery gene
  LCH97_RS10890 (LCH97_10890) bioA 2273505..2274794 (+) 1290 WP_255619203.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  LCH97_RS10895 (LCH97_10895) - 2274915..2276477 (+) 1563 WP_227301703.1 PilZ domain-containing protein -
  LCH97_RS10900 (LCH97_10900) proB 2276548..2277666 (+) 1119 WP_227301704.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16182.49 Da        Isoelectric Point: 9.3176

>NTDB_id=618864 LCH97_RS10875 WP_227301701.1 2272238..2272705(-) (pilE) [Vogesella sp. XCS3]
MKRVQQGFTLIELMIVVAIIGILAAIAIPAYQDYTKRAHVSEGLTLAAAAKTAVTEYYATNNAFVSGTAPLNASYGVATN
TDIKGNAVDKVSVLANGVVQITYNSKVTSGSAIWLNPSINNGSLQWKCAAAPTSGVTKLDSAANVDAKYVPSNCR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=618864 LCH97_RS10875 WP_227301701.1 2272238..2272705(-) (pilE) [Vogesella sp. XCS3]
ATGAAGCGTGTACAACAGGGTTTTACCCTGATCGAACTGATGATTGTTGTGGCCATCATCGGTATCCTTGCCGCGATCGC
TATTCCGGCTTATCAGGACTACACCAAACGAGCACACGTGTCGGAAGGCTTGACTCTAGCAGCTGCAGCTAAAACCGCAG
TAACCGAGTACTATGCTACTAATAACGCTTTTGTCAGTGGTACGGCCCCGCTTAACGCTTCTTACGGTGTGGCAACAAAT
ACTGACATTAAGGGCAATGCTGTCGACAAAGTATCTGTACTTGCTAATGGTGTGGTACAAATTACTTACAACTCCAAAGT
GACTAGTGGCTCTGCCATATGGCTTAATCCAAGCATTAATAATGGCTCGTTGCAATGGAAGTGTGCTGCAGCGCCGACCT
CTGGTGTAACAAAGCTTGATAGTGCAGCTAACGTTGATGCCAAGTATGTCCCATCTAACTGCCGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

45.455

100

0.484
  pilA2 Legionella pneumophila str. Paris

49.342

98.065

0.484
  pilA2 Legionella pneumophila strain ERS1305867

49.342

98.065

0.484
  pilE Neisseria gonorrhoeae strain FA1090

44.785

100

0.471
  pilA Ralstonia pseudosolanacearum GMI1000

42.262

100

0.458
  comP Acinetobacter baylyi ADP1

43.59

100

0.439
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.263

100

0.432
  pilA/pilA1 Eikenella corrodens VA1

36.025

100

0.374
  pilA Pseudomonas aeruginosa PAK

34.356

100

0.361