Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LCH97_RS18795 Genome accession   NZ_CP085530
Coordinates   2272759..2273193 (-) Length   144 a.a.
NCBI ID   WP_304956710.1    Uniprot ID   -
Organism   Vogesella sp. XCS3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2267759..2278193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH97_RS10860 (LCH97_10860) - 2268013..2269776 (-) 1764 WP_227301698.1 PglL family O-oligosaccharyltransferase -
  LCH97_RS10865 (LCH97_10865) - 2269844..2271655 (-) 1812 WP_227301699.1 PglL family O-oligosaccharyltransferase -
  LCH97_RS10870 (LCH97_10870) pilA2 2271717..2272184 (-) 468 WP_227301700.1 pilin Machinery gene
  LCH97_RS10875 (LCH97_10875) pilE 2272238..2272705 (-) 468 WP_227301701.1 pilin Machinery gene
  LCH97_RS18795 pilE 2272759..2273193 (-) 435 WP_304956710.1 pilin Machinery gene
  LCH97_RS10890 (LCH97_10890) bioA 2273505..2274794 (+) 1290 WP_255619203.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  LCH97_RS10895 (LCH97_10895) - 2274915..2276477 (+) 1563 WP_227301703.1 PilZ domain-containing protein -
  LCH97_RS10900 (LCH97_10900) proB 2276548..2277666 (+) 1119 WP_227301704.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15115.03 Da        Isoelectric Point: 7.8177

>NTDB_id=618876 LCH97_RS18795 WP_304956710.1 2272759..2273193(-) (pilE) [Vogesella sp. XCS3]
MQNRQSGFTLIELMIVVAITGILAAIAIPAYQDYTRRAYISEVLVAASAAKTAVEEYHAANGSWPASNTSAGIADATASR
GGSIARLDVQASGSVSVISVEVSSKIFSGARVWLTPQTTASGSYRWVCSGDSDLTRLLPSNCRN

Nucleotide


Download         Length: 435 bp        

>NTDB_id=618876 LCH97_RS18795 WP_304956710.1 2272759..2273193(-) (pilE) [Vogesella sp. XCS3]
ATGCAGAACAGACAGTCCGGCTTTACGCTGATCGAACTGATGATCGTAGTGGCCATCACTGGCATCTTGGCGGCGATCGC
TATCCCGGCTTACCAGGATTACACCCGGCGCGCTTACATCAGCGAGGTGCTGGTAGCTGCCAGCGCCGCTAAAACTGCTG
TAGAGGAATACCATGCGGCCAACGGTAGCTGGCCAGCCAGTAACACCAGTGCCGGCATTGCCGATGCCACCGCCTCGCGC
GGTGGAAGTATCGCCCGTCTGGATGTGCAGGCTTCTGGTTCGGTGAGCGTCATCAGCGTAGAAGTCAGCAGCAAGATTTT
TAGCGGGGCCCGCGTGTGGCTGACTCCGCAAACCACAGCCTCCGGCAGTTACCGCTGGGTGTGCAGTGGCGATAGCGATT
TGACGCGGCTGTTGCCATCCAACTGCCGTAATTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

42.169

100

0.486
  pilE Neisseria gonorrhoeae MS11

41.718

100

0.472
  comP Acinetobacter baylyi ADP1

44.898

100

0.458
  pilA2 Legionella pneumophila str. Paris

42.857

97.222

0.417
  pilA2 Legionella pneumophila strain ERS1305867

42.143

97.222

0.41
  pilA Pseudomonas aeruginosa PAK

37.5

100

0.396
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.286

97.222

0.382
  pilA/pilA1 Eikenella corrodens VA1

35.714

100

0.382
  pilA Acinetobacter baumannii strain A118

36.735

100

0.375