Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   SII_RS08420 Genome accession   NC_022237
Coordinates   1744175..1744492 (-) Length   105 a.a.
NCBI ID   WP_003075998.1    Uniprot ID   A0AAE8G310
Organism   Streptococcus intermedius C270     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1739175..1749492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS08395 (SII_1653) - 1740504..1741703 (-) 1200 WP_003073996.1 acetate kinase -
  SII_RS08400 (SII_1654) comYH 1741750..1742703 (-) 954 WP_003073994.1 class I SAM-dependent methyltransferase Machinery gene
  SII_RS08405 (SII_1655) comGG 1742794..1743120 (-) 327 WP_020999196.1 competence type IV pilus minor pilin ComGG -
  SII_RS08410 (SII_1656) comGF/cglF 1743101..1743538 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  SII_RS08415 comGE/cglE 1743522..1743815 (-) 294 WP_041823288.1 competence type IV pilus minor pilin ComGE Machinery gene
  SII_RS10330 (SII_1657) comGD 1743796..1744215 (-) 420 Protein_1655 competence type IV pilus minor pilin ComGD -
  SII_RS08420 (SII_1658) comYC 1744175..1744492 (-) 318 WP_003075998.1 competence type IV pilus major pilin ComGC Machinery gene
  SII_RS08425 (SII_1659) comYB 1744489..1745511 (-) 1023 WP_020999198.1 competence type IV pilus assembly protein ComGB Machinery gene
  SII_RS08430 (SII_1660) comYA 1745453..1746394 (-) 942 WP_020999199.1 competence type IV pilus ATPase ComGA Machinery gene
  SII_RS08435 (SII_1661) - 1746463..1746828 (-) 366 WP_003075933.1 DUF1033 family protein -
  SII_RS08440 (SII_1662) glnA 1747050..1748396 (-) 1347 WP_020999200.1 type I glutamate--ammonia ligase -
  SII_RS08445 (SII_1663) - 1748435..1748794 (-) 360 WP_003073972.1 MerR family transcriptional regulator -
  SII_RS08450 (SII_1664) - 1748871..1749401 (-) 531 WP_003073971.1 FUSC family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11666.77 Da        Isoelectric Point: 10.1006

>NTDB_id=61558 SII_RS08420 WP_003075998.1 1744175..1744492(-) (comYC) [Streptococcus intermedius C270]
MKKIKNLKVKAFTLVEMLVVLLIISVLMLLFVPNLTKQKEAVTEKGNAAVVKVVESQAELFEVNHSNEKATLSKLVTEGT
ITDKQAASYKAYYAKHTKETRSVAD

Nucleotide


Download         Length: 318 bp        

>NTDB_id=61558 SII_RS08420 WP_003075998.1 1744175..1744492(-) (comYC) [Streptococcus intermedius C270]
GTGAAAAAAATTAAAAATTTGAAGGTTAAAGCTTTTACTTTAGTGGAAATGTTAGTTGTGCTTTTAATCATTAGTGTTTT
AATGCTCTTATTTGTGCCGAATTTGACCAAGCAAAAGGAAGCAGTAACAGAAAAAGGAAATGCAGCTGTGGTCAAAGTTG
TAGAGAGCCAAGCGGAACTTTTTGAGGTCAATCATAGCAATGAAAAAGCAACGCTTTCAAAATTAGTCACTGAAGGCACG
ATTACAGATAAGCAGGCAGCGTCATATAAGGCTTACTATGCGAAACATACAAAAGAAACTCGTTCTGTTGCAGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

73.333

100

0.733
  comYC Streptococcus mutans UA140

68.571

100

0.686
  comYC Streptococcus mutans UA159

68.571

100

0.686
  comGC/cglC Streptococcus mitis NCTC 12261

68.627

97.143

0.667
  comGC/cglC Streptococcus mitis SK321

68.627

97.143

0.667
  comGC/cglC Streptococcus pneumoniae Rx1

66.667

97.143

0.648
  comGC/cglC Streptococcus pneumoniae D39

66.667

97.143

0.648
  comGC/cglC Streptococcus pneumoniae TIGR4

66.667

97.143

0.648
  comGC/cglC Streptococcus pneumoniae R6

66.667

97.143

0.648
  comGC Lactococcus lactis subsp. cremoris KW2

54.808

99.048

0.543
  comYC Streptococcus suis isolate S10

64.045

84.762

0.543

Multiple sequence alignment