Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SII_RS08425 Genome accession   NC_022237
Coordinates   1744489..1745511 (-) Length   340 a.a.
NCBI ID   WP_020999198.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1739489..1750511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS08395 (SII_1653) - 1740504..1741703 (-) 1200 WP_003073996.1 acetate kinase -
  SII_RS08400 (SII_1654) comYH 1741750..1742703 (-) 954 WP_003073994.1 class I SAM-dependent methyltransferase Machinery gene
  SII_RS08405 (SII_1655) comGG 1742794..1743120 (-) 327 WP_020999196.1 competence type IV pilus minor pilin ComGG -
  SII_RS08410 (SII_1656) comGF/cglF 1743101..1743538 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  SII_RS08415 comGE/cglE 1743522..1743815 (-) 294 WP_041823288.1 competence type IV pilus minor pilin ComGE Machinery gene
  SII_RS10330 (SII_1657) comGD 1743796..1744215 (-) 420 Protein_1655 competence type IV pilus minor pilin ComGD -
  SII_RS08420 (SII_1658) comYC 1744175..1744492 (-) 318 WP_003075998.1 competence type IV pilus major pilin ComGC Machinery gene
  SII_RS08425 (SII_1659) comYB 1744489..1745511 (-) 1023 WP_020999198.1 competence type IV pilus assembly protein ComGB Machinery gene
  SII_RS08430 (SII_1660) comYA 1745453..1746394 (-) 942 WP_020999199.1 competence type IV pilus ATPase ComGA Machinery gene
  SII_RS08435 (SII_1661) - 1746463..1746828 (-) 366 WP_003075933.1 DUF1033 family protein -
  SII_RS08440 (SII_1662) glnA 1747050..1748396 (-) 1347 WP_020999200.1 type I glutamate--ammonia ligase -
  SII_RS08445 (SII_1663) - 1748435..1748794 (-) 360 WP_003073972.1 MerR family transcriptional regulator -
  SII_RS08450 (SII_1664) - 1748871..1749401 (-) 531 WP_003073971.1 FUSC family protein -
  SII_RS08455 (SII_1665) - 1749576..1750256 (-) 681 WP_003075761.1 COG3942 and LysM peptidoglycan-binding domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 39184.33 Da        Isoelectric Point: 9.7483

>NTDB_id=61559 SII_RS08425 WP_020999198.1 1744489..1745511(-) (comYB) [Streptococcus intermedius C270]
MQQDISILNRQKRKKLSTVKQKKVVELLNNLFSSGFHLAEIIDFLKRSALLEKAYVEKMKEGLATGKPFSDIMASLGFSD
NVVTQLSLAELHGNLSLSLSKIEEYLENISKVKKKLIEVATYPFILFIFLVFIMLGLRNYLLPQLESQNIATQLISRLPQ
IFLGSVGVVFALFAIGFYWFRKNSQIRVFSLLSRLPFWGTFVQTYLTAYYAREWGNMIGQGLELSQIFQMMQGQRSAMFQ
EIGKDLEVALQNGQEFSQVVKHYPFFKKELGLMIEYGEVKSKLGCELEVYAQKTWEVFFKRVHQAMNIIQPLVFVFVALM
IVLLYAAMLLPIYQNMEVQL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=61559 SII_RS08425 WP_020999198.1 1744489..1745511(-) (comYB) [Streptococcus intermedius C270]
ATGCAGCAGGACATATCAATCTTGAACAGGCAAAAGCGGAAAAAATTATCCACAGTTAAGCAGAAAAAAGTCGTAGAGTT
ACTAAATAATCTTTTTTCTAGTGGTTTTCACTTGGCAGAAATTATTGATTTTTTGAAACGGAGTGCTTTGTTAGAAAAAG
CCTATGTGGAAAAGATGAAAGAGGGTTTGGCAACTGGAAAGCCTTTTTCAGACATCATGGCAAGTTTAGGTTTTTCGGAT
AATGTAGTAACACAGCTTTCATTGGCAGAATTGCATGGAAATTTATCGCTCAGTTTGAGTAAAATTGAAGAGTATTTGGA
AAATATCTCAAAAGTCAAGAAAAAGTTAATTGAAGTGGCGACTTATCCATTTATTTTATTCATTTTTCTAGTGTTTATTA
TGTTAGGGCTGCGCAATTATTTGTTACCGCAGTTGGAGAGTCAGAATATTGCAACACAATTGATTAGTCGTTTACCACAA
ATTTTTCTGGGTTCAGTAGGAGTTGTTTTTGCTTTGTTTGCGATCGGTTTTTATTGGTTTAGAAAAAACTCACAAATAAG
AGTATTTAGTTTGTTGTCTCGTCTTCCTTTTTGGGGCACTTTTGTTCAAACTTATTTGACAGCTTATTATGCGAGAGAAT
GGGGGAATATGATTGGTCAAGGCTTAGAACTCAGTCAGATTTTCCAGATGATGCAAGGACAGCGCTCTGCTATGTTTCAA
GAAATTGGAAAAGATTTAGAAGTAGCACTGCAAAATGGTCAGGAATTTTCACAAGTAGTTAAACATTATCCATTTTTTAA
AAAAGAATTGGGCTTGATGATTGAATATGGGGAAGTGAAATCCAAATTGGGGTGCGAATTAGAGGTTTATGCTCAAAAAA
CGTGGGAGGTATTTTTTAAACGTGTTCATCAAGCGATGAATATCATTCAGCCATTAGTATTTGTCTTTGTGGCGTTGATG
ATTGTATTGTTGTATGCAGCCATGTTGCTGCCAATTTATCAAAATATGGAGGTTCAATTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

73.529

100

0.735
  comGB/cglB Streptococcus mitis NCTC 12261

69.254

98.529

0.682
  comGB/cglB Streptococcus mitis SK321

68.955

98.529

0.679
  comGB/cglB Streptococcus pneumoniae TIGR4

68.06

98.529

0.671
  comGB/cglB Streptococcus pneumoniae R6

68.06

98.529

0.671
  comGB/cglB Streptococcus pneumoniae Rx1

68.06

98.529

0.671
  comGB/cglB Streptococcus pneumoniae D39

68.06

98.529

0.671
  comYB Streptococcus mutans UA159

60.819

100

0.612
  comYB Streptococcus mutans UA140

60.819

100

0.612
  comGB Lactococcus lactis subsp. cremoris KW2

51.929

99.118

0.515

Multiple sequence alignment