Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LCH18_RS01285 Genome accession   NZ_CP083947
Coordinates   290786..291241 (+) Length   151 a.a.
NCBI ID   WP_224468134.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 285786..296241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS01265 (LCH18_01265) - 287307..288185 (+) 879 WP_224468129.1 metal-dependent hydrolase -
  LCH18_RS01270 (LCH18_01270) - 288336..288926 (+) 591 WP_094148562.1 LemA family protein -
  LCH18_RS01275 (LCH18_01275) - 288964..290037 (+) 1074 WP_224468131.1 TPM domain-containing protein -
  LCH18_RS01280 (LCH18_01280) - 290031..290591 (+) 561 WP_224468132.1 TPM domain-containing protein -
  LCH18_RS01285 (LCH18_01285) pilA 290786..291241 (+) 456 WP_224468134.1 pilin Machinery gene
  LCH18_RS01290 (LCH18_01290) - 291316..293229 (+) 1914 WP_224468136.1 tetratricopeptide repeat protein -
  LCH18_RS01295 (LCH18_01295) - 293213..294085 (+) 873 WP_224468138.1 glycosyltransferase family 2 protein -
  LCH18_RS01300 (LCH18_01300) - 294092..295804 (+) 1713 WP_224468140.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 15426.73 Da        Isoelectric Point: 10.0715

>NTDB_id=608748 LCH18_RS01285 WP_224468134.1 290786..291241(+) (pilA) [Acinetobacter johnsonii strain CSUSB1]
MKSVQKGFTLIELMIVVAIIGILAAIAIPAYQNYTKRAHVSEGLSLAGGAKAAVAEFYSSNNRLPQANSSVGLAAATAIT
GNAVTSVGVGTVDGGTGAANGQITIVYNNKIDGTNNRLMLSPITSVGGVRWTCKVPSSAGIDTKFVPTNCR

Nucleotide


Download         Length: 456 bp        

>NTDB_id=608748 LCH18_RS01285 WP_224468134.1 290786..291241(+) (pilA) [Acinetobacter johnsonii strain CSUSB1]
ATGAAATCAGTTCAAAAGGGTTTCACCCTTATCGAGCTCATGATCGTAGTTGCGATTATTGGTATCCTTGCTGCGATTGC
GATTCCTGCGTATCAAAACTACACGAAACGTGCGCATGTTTCTGAAGGTTTGAGCTTAGCTGGTGGCGCTAAAGCTGCTG
TTGCAGAATTCTATTCTTCTAATAACCGTTTGCCACAAGCTAACTCAAGTGTTGGTTTGGCTGCCGCGACTGCTATTACT
GGTAATGCAGTTACATCGGTTGGTGTTGGTACTGTAGATGGTGGTACAGGTGCAGCAAATGGTCAAATTACAATCGTTTA
TAACAACAAAATTGATGGTACCAATAACCGTTTAATGTTAAGCCCGATTACTTCTGTAGGCGGTGTAAGATGGACTTGTA
AAGTACCATCTAGTGCAGGTATTGATACTAAGTTTGTTCCAACAAACTGCCGTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-151)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

42.941

100

0.483
  pilA2 Legionella pneumophila strain ERS1305867

48.98

97.351

0.477
  pilA2 Legionella pneumophila str. Paris

48.649

98.013

0.477
  pilE Neisseria gonorrhoeae MS11

42.353

100

0.477
  comP Acinetobacter baylyi ADP1

46.104

100

0.47
  pilE Neisseria gonorrhoeae strain FA1090

42.073

100

0.457
  pilA Haemophilus influenzae 86-028NP

41.29

100

0.424
  pilA Haemophilus influenzae Rd KW20

37.821

100

0.391
  pilA/pilA1 Eikenella corrodens VA1

37.58

100

0.391
  pilA Acinetobacter nosocomialis M2

40.972

95.364

0.391
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.013

100

0.377
  pilA Acinetobacter baumannii strain A118

38

99.338

0.377