Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   K6978_RS14925 Genome accession   NZ_CP082214
Coordinates   3384243..3384662 (-) Length   139 a.a.
NCBI ID   WP_274396444.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain OH_261     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3379243..3389662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6978_RS14915 (K6978_14850) pilR 3380263..3381654 (+) 1392 WP_170066996.1 sigma-54 dependent transcriptional regulator Regulator
  K6978_RS14920 (K6978_14855) pilB 3382291..3384000 (-) 1710 WP_274397236.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K6978_RS14925 (K6978_14860) pilA2 3384243..3384662 (-) 420 WP_274396444.1 pilin Machinery gene
  K6978_RS14930 (K6978_14865) pilC 3385015..3386274 (+) 1260 WP_274396445.1 type II secretion system F family protein Machinery gene
  K6978_RS14935 (K6978_14870) - 3386281..3387144 (+) 864 WP_274396446.1 A24 family peptidase -
  K6978_RS14940 (K6978_14875) coaE 3387158..3387763 (+) 606 WP_104604291.1 dephospho-CoA kinase -
  K6978_RS14945 (K6978_14880) - 3387978..3389312 (-) 1335 WP_159407407.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 13940.07 Da        Isoelectric Point: 9.0253

>NTDB_id=600237 K6978_RS14925 WP_274396444.1 3384243..3384662(-) (pilA2) [Xanthomonas cucurbitae strain OH_261]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYLIKARVSEVVLAASSARTTVSEAAAADTGTAMPAAVTIESQASKYVA
SVAYAGGTTNGVITATSQALGGTATGTITLTGTKSANGQVAWVCGGTIPAKYRPATCQG

Nucleotide


Download         Length: 420 bp        

>NTDB_id=600237 K6978_RS14925 WP_274396444.1 3384243..3384662(-) (pilA2) [Xanthomonas cucurbitae strain OH_261]
ATGAAGAAACAACAAGGTTTTACCCTGATCGAATTGATGATCGTGGTTGCGATCATCGCTATTCTGGCCGCTATCGCGCT
GCCAGCCTACCAGGACTACCTGATCAAAGCGCGGGTGTCGGAAGTGGTGCTCGCAGCTTCGTCGGCTCGTACTACCGTTT
CTGAAGCCGCAGCTGCTGACACCGGCACGGCTATGCCTGCAGCAGTGACGATTGAGAGCCAGGCATCCAAGTACGTTGCC
TCTGTGGCTTATGCTGGCGGTACAACTAATGGCGTTATCACTGCGACATCCCAGGCTCTGGGTGGTACCGCCACCGGCAC
GATTACGTTGACGGGCACCAAGTCTGCTAATGGACAGGTCGCTTGGGTCTGTGGCGGCACGATTCCTGCAAAGTACCGCC
CGGCAACTTGCCAAGGATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-138)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

56.028

100

0.568
  pilA2 Legionella pneumophila strain ERS1305867

55.319

100

0.561
  comP Acinetobacter baylyi ADP1

48.026

100

0.525
  pilA Ralstonia pseudosolanacearum GMI1000

41.718

100

0.489
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.638

100

0.482
  pilA/pilA1 Eikenella corrodens VA1

40.132

100

0.439
  pilE Neisseria gonorrhoeae MS11

37.5

100

0.432
  pilE Neisseria gonorrhoeae strain FA1090

36.42

100

0.424
  pilA Haemophilus influenzae 86-028NP

39.716

100

0.403
  pilA Vibrio parahaemolyticus RIMD 2210633

39.855

99.281

0.396
  pilA Acinetobacter baumannii strain A118

37.143

100

0.374