Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K6978_RS14930 Genome accession   NZ_CP082214
Coordinates   3385015..3386274 (+) Length   419 a.a.
NCBI ID   WP_274396445.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain OH_261     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3380015..3391274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6978_RS14915 (K6978_14850) pilR 3380263..3381654 (+) 1392 WP_170066996.1 sigma-54 dependent transcriptional regulator Regulator
  K6978_RS14920 (K6978_14855) pilB 3382291..3384000 (-) 1710 WP_274397236.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K6978_RS14925 (K6978_14860) pilA2 3384243..3384662 (-) 420 WP_274396444.1 pilin Machinery gene
  K6978_RS14930 (K6978_14865) pilC 3385015..3386274 (+) 1260 WP_274396445.1 type II secretion system F family protein Machinery gene
  K6978_RS14935 (K6978_14870) - 3386281..3387144 (+) 864 WP_274396446.1 A24 family peptidase -
  K6978_RS14940 (K6978_14875) coaE 3387158..3387763 (+) 606 WP_104604291.1 dephospho-CoA kinase -
  K6978_RS14945 (K6978_14880) - 3387978..3389312 (-) 1335 WP_159407407.1 HAMP domain-containing sensor histidine kinase -
  K6978_RS14950 (K6978_14885) - 3389768..3390445 (-) 678 WP_003490678.1 response regulator transcription factor -
  K6978_RS14955 (K6978_14890) - 3390508..3390864 (-) 357 WP_159407408.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46001.42 Da        Isoelectric Point: 10.2301

>NTDB_id=600238 K6978_RS14930 WP_274396445.1 3385015..3386274(+) (pilC) [Xanthomonas cucurbitae strain OH_261]
MSVARSAIKKQPVDRNTSLLQTFVWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSVVKQKPKPLFGATGKKITAKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKAMFYPAMVVAVAIVVSAILLIFVVPQFEEVFKNFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSIVGFIFAYKRSPRMQHALDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVADYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=600238 K6978_RS14930 WP_274396445.1 3385015..3386274(+) (pilC) [Xanthomonas cucurbitae strain OH_261]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCCTGCTGCAGACCTTCGTTTGGGAAGG
TGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAAACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCGTGGTGAAGCAAAAGCCGAAGCCGCTGTTCGGAGCGACGGGCAAGAAAATTACTGCCAAAGAC
ATTGCGTTCTTCAGCCGTCAGATGGCAACGATGATGAAGTCGGGCGTGCCTATCGTCAGTTCGCTGGAGATCATCGGCGA
GGGACATAAGAACCCACGCATGAAGAAGATGGTCGGCCAGGTCAGGACAGACATTGAGGGGGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTCCAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGCGAAGGTGCAGGCGTATTGGAG
ACAGTCCTAGATACGGTCGCCACATACAAAGAAAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCGATGTTTTATCC
CGCCATGGTGGTTGCCGTGGCAATCGTTGTAAGTGCGATTTTACTTATCTTCGTGGTACCTCAGTTCGAAGAGGTATTCA
AGAATTTCGGCGCTGAACTACCGGCATTCACCCAGCTTCTCGTCAACGCCTCGCGTTTTATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTATCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGCACTTGA
TCGATTGATCCTCAAGGTCCCCGTGATTGGGCAGATCATGCACAACAGCGCAATTGCACGTTTTGCGCGGACGACTGCCG
TAACGTTCAAGGCGGGTGTACCTCTCGTCGAGGCACTTGGAATCGTTGCAGGTGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTACTGCGGATGCGCGACGATGTATCGGTCGGCTACCCGGTCAACATGGCGATGAAACAAGTGAATCTGTTTCCGCA
CATGGTGGTGCAGATGACCGCAATTGGCGAAGAAGCAGGCGCCTTGGACACGATGCTGTTCAAGGTAGCTGACTACTTCG
AGGAGGAAGTCAACAACGCCGTGGACGCGCTTAGCAGCCTGCTGGAGCCGCTAATCATGGTGTTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.956

96.897

0.513
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Acinetobacter baylyi ADP1

51.358

96.659

0.496
  pilC Acinetobacter baumannii D1279779

50.123

96.659

0.484
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.857

95.227

0.408
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

39

95.465

0.372
  pilC Thermus thermophilus HB27

38.693

94.988

0.368