Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | K6976_RS02875 | Genome accession | NZ_CP082202 |
| Coordinates | 567574..567972 (+) | Length | 132 a.a. |
| NCBI ID | WP_074389460.1 | Uniprot ID | A0AAP6DVV7 |
| Organism | Streptococcus suis strain SS389 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 555912..595511 | 567574..567972 | within | 0 |
Gene organization within MGE regions
Location: 555912..595511
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6976_RS02770 (K6976_02770) | - | 555912..556745 (+) | 834 | WP_221864601.1 | SGNH/GDSL hydrolase family protein | - |
| K6976_RS02775 (K6976_02775) | - | 556717..557313 (+) | 597 | WP_024406376.1 | YpmS family protein | - |
| K6976_RS02780 (K6976_02780) | - | 557403..557678 (+) | 276 | WP_024385016.1 | HU family DNA-binding protein | - |
| K6976_RS02785 (K6976_02785) | - | 557767..558909 (-) | 1143 | WP_222759907.1 | site-specific integrase | - |
| K6976_RS02790 (K6976_02790) | - | 559032..559901 (-) | 870 | WP_222759909.1 | hypothetical protein | - |
| K6976_RS02795 (K6976_02795) | - | 559921..560652 (-) | 732 | WP_222759910.1 | LexA family transcriptional regulator | - |
| K6976_RS02800 (K6976_02800) | - | 560823..561041 (+) | 219 | WP_105155377.1 | helix-turn-helix transcriptional regulator | - |
| K6976_RS02805 (K6976_02805) | - | 561079..561429 (+) | 351 | WP_222759912.1 | hypothetical protein | - |
| K6976_RS02810 (K6976_02810) | - | 561657..562001 (+) | 345 | WP_222759914.1 | hypothetical protein | - |
| K6976_RS02815 (K6976_02815) | - | 562018..562329 (+) | 312 | WP_222759916.1 | excisionase | - |
| K6976_RS02820 (K6976_02820) | - | 562331..562615 (+) | 285 | WP_222759917.1 | hypothetical protein | - |
| K6976_RS02825 (K6976_02825) | - | 562620..562838 (+) | 219 | WP_222759919.1 | hypothetical protein | - |
| K6976_RS02830 (K6976_02830) | - | 562831..563061 (+) | 231 | WP_015984438.1 | hypothetical protein | - |
| K6976_RS10885 | - | 563434..563799 (+) | 366 | WP_261987989.1 | HNH endonuclease signature motif containing protein | - |
| K6976_RS02840 (K6976_02840) | - | 563792..564271 (+) | 480 | WP_222759921.1 | siphovirus Gp157 family protein | - |
| K6976_RS02845 (K6976_02845) | - | 564268..564630 (+) | 363 | WP_226319115.1 | hypothetical protein | - |
| K6976_RS02850 (K6976_02850) | - | 564630..565094 (+) | 465 | WP_222759922.1 | hypothetical protein | - |
| K6976_RS02855 (K6976_02855) | - | 565063..566235 (+) | 1173 | WP_222759924.1 | DEAD/DEAH box helicase family protein | - |
| K6976_RS02860 (K6976_02860) | - | 566256..566576 (+) | 321 | WP_222759925.1 | hypothetical protein | - |
| K6976_RS02865 (K6976_02865) | - | 566586..567281 (+) | 696 | WP_222759927.1 | ERF family protein | - |
| K6976_RS02870 (K6976_02870) | - | 567281..567577 (+) | 297 | WP_222759929.1 | hypothetical protein | - |
| K6976_RS02875 (K6976_02875) | ssbA | 567574..567972 (+) | 399 | WP_074389460.1 | single-stranded DNA-binding protein | Machinery gene |
| K6976_RS02880 (K6976_02880) | - | 567983..568810 (+) | 828 | WP_222759931.1 | bifunctional DNA primase/polymerase | - |
| K6976_RS02885 (K6976_02885) | - | 568794..570182 (+) | 1389 | WP_222759933.1 | virulence-associated E family protein | - |
| K6976_RS02890 (K6976_02890) | - | 570623..570853 (+) | 231 | WP_222759935.1 | DUF3310 domain-containing protein | - |
| K6976_RS02895 (K6976_02895) | - | 570846..571022 (+) | 177 | WP_222759937.1 | hypothetical protein | - |
| K6976_RS02900 (K6976_02900) | - | 571146..571454 (+) | 309 | WP_261987990.1 | DUF1372 family protein | - |
| K6976_RS02905 (K6976_02905) | - | 571679..572527 (+) | 849 | WP_024401611.1 | prohibitin family protein | - |
| K6976_RS02910 (K6976_02910) | - | 572603..573010 (+) | 408 | WP_222759939.1 | DUF1492 domain-containing protein | - |
| K6976_RS02920 (K6976_02920) | - | 573438..573872 (+) | 435 | WP_105154126.1 | terminase small subunit | - |
| K6976_RS02925 (K6976_02925) | - | 573856..575151 (+) | 1296 | WP_105154125.1 | PBSX family phage terminase large subunit | - |
| K6976_RS02930 (K6976_02930) | - | 575155..576633 (+) | 1479 | WP_222759940.1 | phage portal protein | - |
| K6976_RS02935 (K6976_02935) | - | 576608..578302 (+) | 1695 | WP_261987991.1 | minor capsid protein | - |
| K6976_RS02940 (K6976_02940) | - | 578295..578615 (+) | 321 | WP_222759944.1 | hypothetical protein | - |
| K6976_RS02945 (K6976_02945) | - | 578671..578994 (+) | 324 | WP_222759946.1 | hypothetical protein | - |
| K6976_RS02950 (K6976_02950) | - | 578987..579166 (+) | 180 | WP_202852147.1 | hypothetical protein | - |
| K6976_RS02955 (K6976_02955) | - | 579159..579407 (+) | 249 | WP_105155366.1 | hypothetical protein | - |
| K6976_RS02960 (K6976_02960) | - | 579571..580122 (+) | 552 | WP_222759948.1 | DUF4355 domain-containing protein | - |
| K6976_RS02965 (K6976_02965) | - | 580135..581028 (+) | 894 | WP_105155364.1 | phage major capsid protein | - |
| K6976_RS02970 (K6976_02970) | - | 581048..581359 (+) | 312 | WP_105155363.1 | hypothetical protein | - |
| K6976_RS02975 (K6976_02975) | - | 581362..581709 (+) | 348 | WP_105155362.1 | phage head-tail connector protein | - |
| K6976_RS02980 (K6976_02980) | - | 581706..582011 (+) | 306 | WP_105154120.1 | hypothetical protein | - |
| K6976_RS02985 (K6976_02985) | - | 582013..582357 (+) | 345 | WP_105154119.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| K6976_RS02990 (K6976_02990) | - | 582354..582737 (+) | 384 | WP_105155361.1 | hypothetical protein | - |
| K6976_RS02995 (K6976_02995) | - | 582738..583280 (+) | 543 | WP_105155360.1 | phage major tail protein, TP901-1 family | - |
| K6976_RS03000 (K6976_03000) | - | 583328..583669 (+) | 342 | WP_015984469.1 | tail assembly chaperone | - |
| K6976_RS03005 (K6976_03005) | - | 583741..584043 (+) | 303 | WP_105155359.1 | hypothetical protein | - |
| K6976_RS03010 (K6976_03010) | - | 584043..586991 (+) | 2949 | WP_222759949.1 | hypothetical protein | - |
| K6976_RS03015 (K6976_03015) | - | 587005..587796 (+) | 792 | WP_222759951.1 | distal tail protein Dit | - |
| K6976_RS03020 (K6976_03020) | - | 587793..592391 (+) | 4599 | WP_222759953.1 | phage tail spike protein | - |
| K6976_RS03025 (K6976_03025) | - | 592410..592646 (+) | 237 | WP_105182175.1 | hypothetical protein | - |
| K6976_RS03030 (K6976_03030) | - | 592643..593149 (+) | 507 | WP_153055000.1 | DUF1366 domain-containing protein | - |
| K6976_RS03035 (K6976_03035) | - | 593153..593365 (+) | 213 | WP_105154113.1 | hypothetical protein | - |
| K6976_RS03040 (K6976_03040) | - | 593367..593786 (+) | 420 | WP_052833549.1 | hypothetical protein | - |
| K6976_RS03045 (K6976_03045) | - | 593783..594118 (+) | 336 | WP_105154112.1 | phage holin | - |
| K6976_RS03050 (K6976_03050) | - | 594120..595511 (+) | 1392 | WP_222759955.1 | peptidoglycan amidohydrolase family protein | - |
Sequence
Protein
Download Length: 132 a.a. Molecular weight: 14904.51 Da Isoelectric Point: 4.6582
>NTDB_id=599875 K6976_RS02875 WP_074389460.1 567574..567972(+) (ssbA) [Streptococcus suis strain SS389]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQDGEREADFINCVIWRQQAENLANWVKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRGQQSNSQDGSFGNSSPMDIQDEDLPF
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQDGEREADFINCVIWRQQAENLANWVKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRGQQSNSQDGSFGNSSPMDIQDEDLPF
Nucleotide
Download Length: 399 bp
>NTDB_id=599875 K6976_RS02875 WP_074389460.1 567574..567972(+) (ssbA) [Streptococcus suis strain SS389]
ATGATTAACAACGTAGTATTGGTAGGTCGCATGACTCGTGATGCAGAACTTCGTTATACTCCGTCAAACCAGGCTGTTGC
GACTTTTACCTTGGCTGTCAATCGCAACTTCAAAAACCAAGATGGTGAGCGGGAAGCGGACTTCATCAACTGTGTCATTT
GGCGTCAGCAAGCCGAAAACTTGGCTAACTGGGTTAAGAAAGGGGCTCTGATTGGTGTTACAGGTCGCATTCAGACTCGT
AGCTACGATAACCAGCAGGGACAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTGG
ACAACAGTCTAATTCTCAAGATGGATCATTTGGAAATTCAAGTCCTATGGATATCCAAGACGAAGATTTGCCGTTCTAG
ATGATTAACAACGTAGTATTGGTAGGTCGCATGACTCGTGATGCAGAACTTCGTTATACTCCGTCAAACCAGGCTGTTGC
GACTTTTACCTTGGCTGTCAATCGCAACTTCAAAAACCAAGATGGTGAGCGGGAAGCGGACTTCATCAACTGTGTCATTT
GGCGTCAGCAAGCCGAAAACTTGGCTAACTGGGTTAAGAAAGGGGCTCTGATTGGTGTTACAGGTCGCATTCAGACTCGT
AGCTACGATAACCAGCAGGGACAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTGG
ACAACAGTCTAATTCTCAAGATGGATCATTTGGAAATTCAAGTCCTATGGATATCCAAGACGAAGATTTGCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.488 |
100 |
0.697 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.682 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.727 |
100 |
0.477 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.455 |
100 |
0.455 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.046 |
82.576 |
0.455 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
44.697 |
100 |
0.447 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.697 |
100 |
0.447 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.697 |
100 |
0.447 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.697 |
100 |
0.447 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.697 |
100 |
0.447 |
| ssbA | Streptococcus mutans UA159 |
43.939 |
100 |
0.439 |
| ssb | Vibrio cholerae strain A1552 |
28.902 |
100 |
0.379 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
47.17 |
80.303 |
0.379 |