Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   LPB402_RS08840 Genome accession   NZ_CP079820
Coordinates   1838175..1838606 (-) Length   143 a.a.
NCBI ID   WP_219088883.1    Uniprot ID   -
Organism   Neisseria sicca ATCC 29256     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1833175..1843606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB402_RS08815 (LPB402_08820) - 1833773..1835191 (-) 1419 WP_219088889.1 sodium:proton antiporter -
  LPB402_RS08820 (LPB402_08825) - 1835634..1835993 (-) 360 WP_070824330.1 YbaN family protein -
  LPB402_RS08825 (LPB402_08830) - 1836008..1836604 (-) 597 WP_219088887.1 DUF1415 domain-containing protein -
  LPB402_RS08830 (LPB402_08835) - 1836722..1837204 (-) 483 WP_003684427.1 Lrp/AsnC family transcriptional regulator -
  LPB402_RS08835 (LPB402_08840) - 1837607..1838080 (-) 474 WP_219088885.1 pilin -
  LPB402_RS08840 (LPB402_08845) pilA2 1838175..1838606 (-) 432 WP_219088883.1 pilin Machinery gene
  LPB402_RS08845 (LPB402_08850) glnD 1839398..1841956 (-) 2559 WP_219088881.1 [protein-PII] uridylyltransferase -
  LPB402_RS08850 (LPB402_08855) - 1841976..1842272 (-) 297 WP_003680870.1 helix-turn-helix domain-containing protein -
  LPB402_RS08855 (LPB402_08860) - 1842513..1843520 (-) 1008 WP_219088879.1 IS5 family transposase -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15195.75 Da        Isoelectric Point: 9.7063

>NTDB_id=589707 LPB402_RS08840 WP_219088883.1 1838175..1838606(-) (pilA2) [Neisseria sicca ATCC 29256]
MKAIQKGFTLIELMIVIAILGILAVIALPAYQDYTIRAKISEGLSLAEPAKLAVAETSAALGGLDKVTATNTGYTFPTKG
TDYVKSIVITPKTGVITVTTQNTGASKQPVFTLTPNQEKPEFPITWKCKSTGGETKHVPANCR

Nucleotide


Download         Length: 432 bp        

>NTDB_id=589707 LPB402_RS08840 WP_219088883.1 1838175..1838606(-) (pilA2) [Neisseria sicca ATCC 29256]
ATGAAAGCAATCCAAAAAGGTTTTACCCTGATCGAATTGATGATCGTCATCGCCATCTTGGGCATTCTGGCCGTAATCGC
TCTGCCTGCATACCAAGACTACACCATCCGCGCTAAAATTTCAGAAGGTCTGAGCTTAGCTGAGCCTGCCAAGTTGGCTG
TAGCAGAAACTTCTGCAGCTTTAGGTGGTTTAGATAAGGTTACTGCTACTAATACTGGTTATACTTTTCCTACTAAAGGT
ACCGATTACGTTAAAAGCATTGTAATTACACCTAAAACTGGTGTAATTACAGTAACTACTCAAAATACTGGTGCTAGTAA
ACAGCCTGTCTTTACTCTGACCCCTAACCAAGAAAAACCTGAGTTTCCTATCACTTGGAAATGTAAATCTACTGGTGGTG
AAACCAAACACGTTCCTGCTAACTGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

51.773

98.601

0.51
  pilA2 Legionella pneumophila strain ERS1305867

51.773

98.601

0.51
  pilE Neisseria gonorrhoeae MS11

40.361

100

0.469
  pilA Ralstonia pseudosolanacearum GMI1000

39.759

100

0.462
  comP Acinetobacter baylyi ADP1

41.722

100

0.441
  pilE Neisseria gonorrhoeae strain FA1090

38.75

100

0.434
  pilA/pilA1 Eikenella corrodens VA1

39.216

100

0.42
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.958

100

0.42
  pilA Haemophilus influenzae 86-028NP

39.456

100

0.406
  pilA Glaesserella parasuis strain SC1401

36.735

100

0.378
  pilA Haemophilus influenzae Rd KW20

36.486

100

0.378
  pilA/pilAII Pseudomonas stutzeri DSM 10701

36.62

99.301

0.364