Detailed information NTG0588854

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: KXJ80_RS08640
• Genome accession: NZ_CP079718
• Coordinates: 1704568..1705680 (+)
• Length: 370 a.a.
• NCBI ID: WP_188870156.1
• Uniprot ID: -
• Organism: Shewanella xiamenensis strain HD6416
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1699568..1710680

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KXJ80_RS08610 (KXJ80_08570)	-	1700311..1700745 (-)	435	WP_218737166.1	DUF4426 domain-containing protein	-
KXJ80_RS08615 (KXJ80_08575)	yggU	1700819..1701109 (-)	291	WP_037420787.1	DUF167 family protein YggU	-
KXJ80_RS08620 (KXJ80_08580)	-	1701109..1701657 (-)	549	WP_037420784.1	YggT family protein	-
KXJ80_RS08625 (KXJ80_08585)	proC	1701732..1702550 (-)	819	WP_218737165.1	pyrroline-5-carboxylate reductase	-
KXJ80_RS08630 (KXJ80_08590)	-	1702766..1703485 (-)	720	WP_259474653.1	YggS family pyridoxal phosphate-dependent enzyme	-
KXJ80_RS08635 (KXJ80_08595)	pilT	1703521..1704558 (+)	1038	WP_037420775.1	type IV pilus twitching motility protein PilT	Machinery gene
KXJ80_RS08640 (KXJ80_08600)	pilU	1704568..1705680 (+)	1113	WP_188870156.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
KXJ80_RS08645 (KXJ80_08605)	-	1705852..1706385 (+)	534	WP_037420768.1	glutathione peroxidase	-
KXJ80_RS08650 (KXJ80_08610)	hemH	1706454..1707437 (+)	984	WP_211164613.1	ferrochelatase	-
KXJ80_RS08655 (KXJ80_08615)	ruvX	1707501..1707926 (-)	426	WP_037420762.1	Holliday junction resolvase RuvX	-
KXJ80_RS08660 (KXJ80_08620)	-	1707956..1708519 (-)	564	WP_069453279.1	YqgE/AlgH family protein	-
KXJ80_RS08665 (KXJ80_08625)	yciH	1708588..1708917 (-)	330	WP_037420757.1	stress response translation initiation inhibitor YciH	-
KXJ80_RS08670 (KXJ80_08630)	-	1709080..1709394 (-)	315	WP_037420754.1	hypothetical protein	-
KXJ80_RS08675 (KXJ80_08635)	-	1709573..1710133 (+)	561	WP_055647824.1	DUF4136 domain-containing protein	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 41117.33 Da
• Isoelectric Point: 6.3725

>NTDB_id=588854 KXJ80_RS08640 WP_188870156.1 1704568..1705680(+) (pilU) [Shewanella xiamenensis strain HD6416]
MDVRPFLKVMVERKASDLFITAGFPPSAKIDGELRPLAESAFTPAQSLDFVESVMTEAQKKEFHTTRECNFAFAVKELGR
FRVSAFWQRESPGCVMRRIETKIPEVDDLKLPPILKDLVMSKRGLIIMVGGTGTGKSTSLAALVGYRNAHARGHILTIED
PVEFVHDHRKSIITQREVGIDTESFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI
MHLVPESKHQQLLFDLSLNLRGIVAQQLVAKVDGTGRRAAIEVLINTPRVASLIAKNELHLLKETMAKSNEQGMQTFDQA
LLQLYVDGEISYADALHHADSPNDLRLMIKLQNKEPASSSFMEGVTLDMD

Nucleotide

• Length: 1113 bp

>NTDB_id=588854 KXJ80_RS08640 WP_188870156.1 1704568..1705680(+) (pilU) [Shewanella xiamenensis strain HD6416]
ATGGATGTCCGTCCGTTTTTAAAAGTCATGGTGGAGCGTAAAGCCTCGGACCTGTTTATTACCGCAGGGTTTCCGCCGAG
CGCCAAAATCGATGGTGAGTTACGCCCGTTAGCCGAGAGTGCCTTCACGCCCGCGCAGTCTTTGGATTTTGTCGAGTCCG
TGATGACGGAGGCGCAAAAGAAGGAGTTTCACACGACTCGTGAGTGTAACTTTGCTTTTGCGGTTAAGGAGTTGGGTCGT
TTTCGCGTCAGTGCATTCTGGCAGCGTGAGTCTCCGGGTTGTGTTATGCGCCGGATTGAGACCAAAATCCCTGAAGTGGA
TGATTTAAAACTGCCACCCATTTTAAAAGATCTGGTGATGAGTAAGCGTGGACTTATCATCATGGTGGGGGGAACAGGGA
CCGGTAAATCGACTTCCTTAGCTGCATTAGTCGGTTACCGCAATGCCCATGCCCGCGGGCATATCTTGACGATTGAAGAC
CCTGTGGAATTTGTTCACGATCATCGCAAAAGTATCATTACTCAACGTGAAGTGGGCATAGATACAGAGTCCTTTGATGC
GGCGTTGAAAAGCTCGTTGCGTCAGGCGCCTGATGTGATCCTTATCGGTGAAATTCGAACCCAAGAAACCATGGAGTTTG
CGCTCTCCTTTGCTGAAACGGGCCATCTGTGTATGGCGACACTGCATGCTAACAATGCTAACCAAGCATTAGACCGGATT
ATGCACTTAGTGCCAGAGAGTAAACATCAACAGCTATTATTCGATTTGTCACTCAACCTGCGTGGCATTGTGGCGCAGCA
GCTGGTGGCTAAAGTTGATGGCACAGGGCGCCGGGCGGCGATTGAAGTCTTGATCAATACGCCACGTGTCGCGAGTTTGA
TTGCTAAAAACGAGCTGCATTTGCTCAAAGAAACCATGGCCAAATCGAATGAGCAGGGCATGCAGACCTTTGACCAAGCA
CTGTTACAGCTCTATGTCGATGGGGAGATCAGTTATGCCGACGCGCTTCACCATGCTGACTCACCCAACGACTTGCGGTT
AATGATTAAATTGCAAAATAAAGAACCCGCCAGTTCGAGCTTTATGGAAGGCGTGACCTTGGATATGGATTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	60.108	100	0.603
pilU	Vibrio cholerae strain A1552	58.919	100	0.589
pilU	Acinetobacter baylyi ADP1	60.795	95.135	0.578
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	43.293	88.649	0.384
pilT	Vibrio cholerae strain A1552	43.293	88.649	0.384
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.29	93.243	0.376
pilT	Acinetobacter nosocomialis M2	39.474	92.432	0.365
pilT	Acinetobacter baumannii D1279779	39.474	92.432	0.365
pilT	Acinetobacter baumannii strain A118	39.474	92.432	0.365
pilT	Legionella pneumophila strain Lp02	40.785	89.459	0.365
pilT	Legionella pneumophila strain ERS1305867	40.785	89.459	0.365
pilT	Acinetobacter baylyi ADP1	39.181	92.432	0.362