Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CLOPA_RS01590 | Genome accession | NC_021182 |
| Coordinates | 336917..337318 (+) | Length | 133 a.a. |
| NCBI ID | WP_015613718.1 | Uniprot ID | R4K0U4 |
| Organism | Clostridium pasteurianum BC1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 305990..364639 | 336917..337318 | within | 0 |
Gene organization within MGE regions
Location: 305990..364639
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLOPA_RS01430 (Clopa_0294) | - | 305990..306706 (+) | 717 | WP_015613684.1 | ABC transporter ATP-binding protein | - |
| CLOPA_RS01435 (Clopa_0295) | - | 306703..307899 (+) | 1197 | WP_015613685.1 | ABC transporter permease | - |
| CLOPA_RS01440 (Clopa_0296) | - | 307928..308896 (+) | 969 | Protein_253 | glycosyltransferase family 2 protein | - |
| CLOPA_RS01445 (Clopa_0297) | - | 309134..309817 (+) | 684 | WP_015613686.1 | hypothetical protein | - |
| CLOPA_RS01450 (Clopa_0298) | nadA | 310112..311023 (+) | 912 | WP_015613687.1 | quinolinate synthase NadA | - |
| CLOPA_RS25740 | - | 311025..312328 (+) | 1304 | Protein_256 | L-aspartate oxidase | - |
| CLOPA_RS25745 | nadC | 312309..313145 (+) | 837 | WP_207637894.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| CLOPA_RS01460 (Clopa_0300) | - | 314013..315392 (+) | 1380 | WP_015613689.1 | radical SAM protein | - |
| CLOPA_RS01465 (Clopa_0301) | - | 316041..317318 (+) | 1278 | WP_015613690.1 | ABC transporter substrate-binding protein | - |
| CLOPA_RS01470 (Clopa_0302) | - | 317586..318731 (-) | 1146 | WP_015613691.1 | glycosyltransferase family 1 protein | - |
| CLOPA_RS01475 (Clopa_0303) | - | 319012..320028 (+) | 1017 | WP_041711109.1 | CotS family spore coat protein | - |
| CLOPA_RS01480 (Clopa_0304) | - | 320025..320237 (+) | 213 | WP_015613693.1 | hypothetical protein | - |
| CLOPA_RS01485 (Clopa_0305) | - | 320244..321002 (+) | 759 | WP_015613694.1 | hypothetical protein | - |
| CLOPA_RS01490 (Clopa_0306) | - | 321027..322055 (+) | 1029 | WP_015613695.1 | CotS family spore coat protein | - |
| CLOPA_RS01495 (Clopa_0307) | - | 322133..323260 (-) | 1128 | WP_015613696.1 | glycosyltransferase family 1 protein | - |
| CLOPA_RS01500 (Clopa_0308) | - | 323543..324547 (+) | 1005 | WP_015613697.1 | CotS family spore coat protein | - |
| CLOPA_RS01505 (Clopa_0309) | - | 324664..325443 (+) | 780 | WP_015613698.1 | sporulation peptidase YabG | - |
| CLOPA_RS01510 (Clopa_0310) | - | 325485..327143 (-) | 1659 | WP_015613699.1 | recombinase family protein | - |
| CLOPA_RS01515 (Clopa_0311) | - | 327247..328002 (-) | 756 | WP_015613700.1 | hypothetical protein | - |
| CLOPA_RS25750 (Clopa_0312) | - | 328090..329583 (-) | 1494 | WP_015613701.1 | GIY-YIG nuclease family protein | - |
| CLOPA_RS01525 (Clopa_0313) | - | 329680..330015 (-) | 336 | WP_015613702.1 | hypothetical protein | - |
| CLOPA_RS01530 (Clopa_0314) | - | 330047..330466 (-) | 420 | WP_015613703.1 | helix-turn-helix transcriptional regulator | - |
| CLOPA_RS01535 (Clopa_0315) | - | 330642..330848 (+) | 207 | WP_015613704.1 | helix-turn-helix transcriptional regulator | - |
| CLOPA_RS24675 (Clopa_0316) | - | 330988..331143 (+) | 156 | WP_015613705.1 | hypothetical protein | - |
| CLOPA_RS24680 | - | 331287..331424 (+) | 138 | WP_155241850.1 | hypothetical protein | - |
| CLOPA_RS01545 (Clopa_0318) | - | 331421..331957 (+) | 537 | WP_015613707.1 | helix-turn-helix transcriptional regulator | - |
| CLOPA_RS25485 (Clopa_0319) | - | 331963..332133 (+) | 171 | WP_172638596.1 | hypothetical protein | - |
| CLOPA_RS01550 (Clopa_0320) | - | 332176..332481 (+) | 306 | WP_155241851.1 | hypothetical protein | - |
| CLOPA_RS23500 (Clopa_0321) | - | 332578..333141 (+) | 564 | WP_015613710.1 | hypothetical protein | - |
| CLOPA_RS23505 (Clopa_0322) | - | 333141..334262 (+) | 1122 | WP_015613711.1 | hypothetical protein | - |
| CLOPA_RS01565 (Clopa_0323) | - | 334290..334592 (+) | 303 | WP_015613712.1 | hypothetical protein | - |
| CLOPA_RS24065 (Clopa_0324) | - | 334597..335058 (+) | 462 | WP_015613713.1 | hypothetical protein | - |
| CLOPA_RS01575 (Clopa_0325) | - | 335312..336010 (+) | 699 | WP_015613714.1 | amino acid racemase | - |
| CLOPA_RS01580 (Clopa_0326) | - | 336159..336344 (+) | 186 | WP_015613715.1 | hypothetical protein | - |
| CLOPA_RS01585 (Clopa_0327) | - | 336375..336698 (+) | 324 | WP_015613716.1 | hypothetical protein | - |
| CLOPA_RS24685 (Clopa_0328) | - | 336763..336906 (+) | 144 | WP_015613717.1 | hypothetical protein | - |
| CLOPA_RS01590 (Clopa_0329) | ssb | 336917..337318 (+) | 402 | WP_015613718.1 | single-stranded DNA-binding protein | Machinery gene |
| CLOPA_RS01595 (Clopa_0330) | - | 337455..337796 (+) | 342 | WP_015613719.1 | DNA-directed RNA polymerase sigma-70 factor | - |
| CLOPA_RS01600 (Clopa_0331) | - | 338013..338357 (+) | 345 | WP_015613720.1 | hypothetical protein | - |
| CLOPA_RS25490 (Clopa_0332) | - | 338428..338595 (+) | 168 | WP_015613721.1 | hypothetical protein | - |
| CLOPA_RS01605 (Clopa_0333) | - | 338595..339245 (+) | 651 | WP_015613722.1 | tyrosine-type recombinase/integrase | - |
| CLOPA_RS01610 (Clopa_0334) | - | 339510..339983 (+) | 474 | WP_015613723.1 | hypothetical protein | - |
| CLOPA_RS01615 (Clopa_0335) | - | 339985..340311 (+) | 327 | WP_015613724.1 | HNH endonuclease | - |
| CLOPA_RS01620 (Clopa_0336) | - | 340435..340743 (+) | 309 | WP_015613725.1 | P27 family phage terminase small subunit | - |
| CLOPA_RS01625 (Clopa_0337) | - | 340730..342388 (+) | 1659 | WP_015613726.1 | terminase TerL endonuclease subunit | - |
| CLOPA_RS24690 (Clopa_0338) | - | 342403..342558 (+) | 156 | WP_015613727.1 | hypothetical protein | - |
| CLOPA_RS01630 (Clopa_0339) | - | 342595..343770 (+) | 1176 | WP_015613728.1 | phage portal protein | - |
| CLOPA_RS01635 (Clopa_0340) | - | 343745..344485 (+) | 741 | WP_015613729.1 | head maturation protease, ClpP-related | - |
| CLOPA_RS01640 (Clopa_0341) | - | 344487..345938 (+) | 1452 | WP_015613730.1 | phage major capsid protein | - |
| CLOPA_RS01645 (Clopa_0342) | - | 345951..346265 (+) | 315 | WP_015613731.1 | hypothetical protein | - |
| CLOPA_RS01650 (Clopa_0343) | - | 346262..346606 (+) | 345 | WP_015613732.1 | hypothetical protein | - |
| CLOPA_RS01655 (Clopa_0344) | - | 346603..346998 (+) | 396 | WP_015613733.1 | hypothetical protein | - |
| CLOPA_RS01660 (Clopa_0345) | - | 346985..347299 (+) | 315 | WP_015613734.1 | hypothetical protein | - |
| CLOPA_RS01665 (Clopa_0346) | - | 347312..347857 (+) | 546 | WP_015613735.1 | hypothetical protein | - |
| CLOPA_RS01670 (Clopa_0347) | - | 347881..348180 (+) | 300 | WP_015613736.1 | hypothetical protein | - |
| CLOPA_RS23510 (Clopa_0349) | - | 348484..351639 (+) | 3156 | WP_015613738.1 | phage tail tape measure protein | - |
| CLOPA_RS01680 (Clopa_0350) | - | 351636..352337 (+) | 702 | WP_015613739.1 | phage tail domain-containing protein | - |
| CLOPA_RS01685 (Clopa_0351) | - | 352414..353895 (+) | 1482 | WP_015613740.1 | hypothetical protein | - |
| CLOPA_RS01690 (Clopa_0352) | - | 353897..356239 (+) | 2343 | WP_015613741.1 | cellulase N-terminal Ig-like domain-containing protein | - |
| CLOPA_RS01695 (Clopa_0353) | - | 356339..357394 (+) | 1056 | WP_242834252.1 | acyltransferase | - |
| CLOPA_RS01705 (Clopa_0354) | - | 357619..358839 (+) | 1221 | WP_015613743.1 | family 16 glycosylhydrolase | - |
| CLOPA_RS01710 (Clopa_0355) | - | 359110..361077 (+) | 1968 | WP_015613744.1 | phage tail protein | - |
| CLOPA_RS01715 (Clopa_0356) | - | 361127..361441 (+) | 315 | WP_015613745.1 | hypothetical protein | - |
| CLOPA_RS01720 (Clopa_0357) | - | 361447..362406 (+) | 960 | WP_015613746.1 | GH25 family lysozyme | - |
| CLOPA_RS01725 (Clopa_0358) | - | 362466..362837 (+) | 372 | WP_015613747.1 | hypothetical protein | - |
| CLOPA_RS01730 (Clopa_0359) | - | 363119..364639 (+) | 1521 | WP_015613748.1 | FG-GAP-like repeat-containing protein | - |
Sequence
Protein
Download Length: 133 a.a. Molecular weight: 14636.54 Da Isoelectric Point: 5.9247
>NTDB_id=58545 CLOPA_RS01590 WP_015613718.1 336917..337318(+) (ssb) [Clostridium pasteurianum BC1]
MNRVVLIGRLTKDPELKFTPGTGYAVATFAIAVDRRVPNKEGVREADFIPIVIWGKQAESTANYMSKGKLVGISGRIQTR
SYDAKDGSKKYITEVVADEIQFLEWGKKNEGSNHNAEYEAAGITPVDDGDVPF
MNRVVLIGRLTKDPELKFTPGTGYAVATFAIAVDRRVPNKEGVREADFIPIVIWGKQAESTANYMSKGKLVGISGRIQTR
SYDAKDGSKKYITEVVADEIQFLEWGKKNEGSNHNAEYEAAGITPVDDGDVPF
Nucleotide
Download Length: 402 bp
>NTDB_id=58545 CLOPA_RS01590 WP_015613718.1 336917..337318(+) (ssb) [Clostridium pasteurianum BC1]
ATGAATAGGGTAGTTTTGATAGGAAGATTAACAAAAGATCCAGAGCTTAAGTTTACTCCTGGTACTGGGTATGCAGTTGC
AACATTTGCTATAGCAGTGGATAGACGAGTACCTAATAAAGAAGGAGTAAGGGAAGCTGATTTTATTCCTATAGTAATAT
GGGGAAAGCAAGCTGAATCCACAGCTAATTATATGAGTAAAGGCAAGCTTGTAGGCATTAGTGGAAGAATACAAACTAGA
TCCTATGATGCTAAAGATGGCAGTAAGAAATATATAACTGAAGTAGTTGCTGATGAAATACAATTTCTTGAATGGGGAAA
AAAGAATGAAGGTAGTAATCATAATGCTGAATATGAAGCAGCTGGAATAACTCCTGTAGATGATGGGGACGTGCCATTTT
AG
ATGAATAGGGTAGTTTTGATAGGAAGATTAACAAAAGATCCAGAGCTTAAGTTTACTCCTGGTACTGGGTATGCAGTTGC
AACATTTGCTATAGCAGTGGATAGACGAGTACCTAATAAAGAAGGAGTAAGGGAAGCTGATTTTATTCCTATAGTAATAT
GGGGAAAGCAAGCTGAATCCACAGCTAATTATATGAGTAAAGGCAAGCTTGTAGGCATTAGTGGAAGAATACAAACTAGA
TCCTATGATGCTAAAGATGGCAGTAAGAAATATATAACTGAAGTAGTTGCTGATGAAATACAATTTCTTGAATGGGGAAA
AAAGAATGAAGGTAGTAATCATAATGCTGAATATGAAGCAGCTGGAATAACTCCTGTAGATGATGGGGACGTGCCATTTT
AG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
44.444 |
100 |
0.481 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.731 |
78.195 |
0.444 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.152 |
99.248 |
0.399 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
50.962 |
78.195 |
0.398 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
39.394 |
99.248 |
0.391 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
39.394 |
99.248 |
0.391 |
| ssbB/cilA | Streptococcus mitis SK321 |
38.636 |
99.248 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
38.636 |
99.248 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
38.636 |
99.248 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
38.636 |
99.248 |
0.383 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
46.667 |
78.947 |
0.368 |
| ssbA | Streptococcus mutans UA159 |
37.121 |
99.248 |
0.368 |
| ssb | Neisseria gonorrhoeae MS11 |
36.641 |
98.496 |
0.361 |