Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   MWN58_RS01830 Genome accession   NZ_CP095465
Coordinates   386182..386508 (-) Length   108 a.a.
NCBI ID   WP_064969610.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0510     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 381182..391508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWN58_RS01820 (MWN58_01815) - 383729..384043 (+) 315 WP_064969609.1 DUF4286 family protein -
  MWN58_RS01825 (MWN58_01820) gyrB 384170..386104 (+) 1935 WP_041320608.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MWN58_RS01830 (MWN58_01825) ssbB/cilA 386182..386508 (-) 327 WP_064969610.1 single-stranded DNA-binding protein Machinery gene
  MWN58_RS01835 (MWN58_01830) - 386944..387390 (+) 447 WP_004918851.1 hypothetical protein -
  MWN58_RS01840 (MWN58_01835) - 387538..387885 (+) 348 WP_004918849.1 hypothetical protein -
  MWN58_RS01845 (MWN58_01840) - 387889..388965 (-) 1077 WP_014938621.1 tyrosine-type recombinase/integrase -
  MWN58_RS01850 (MWN58_01845) - 389006..389353 (-) 348 WP_014938620.1 hypothetical protein -
  MWN58_RS01855 (MWN58_01850) - 389427..389630 (-) 204 WP_014938619.1 DUF2007 domain-containing protein -
  MWN58_RS01860 (MWN58_01855) - 389706..390890 (+) 1185 WP_274095648.1 acyl-CoA dehydrogenase family protein -
  MWN58_RS01865 (MWN58_01860) - 390919..391194 (+) 276 WP_014938617.1 hypothetical protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12200.93 Da        Isoelectric Point: 9.2704

>NTDB_id=583073 MWN58_RS01830 WP_064969610.1 386182..386508(-) (ssbB/cilA) [Riemerella anatipestifer strain RCAD0510]
MKNKVQLIGNVGNTPEIKEVNNTKVAHLSIATNEVYKNAQGERVEQTEWHKVVAWGGLAEIIEKYVTKGKEIAVEGKLTY
RSYDDKEGNKRYITEIVANDILLLGRTK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=583073 MWN58_RS01830 WP_064969610.1 386182..386508(-) (ssbB/cilA) [Riemerella anatipestifer strain RCAD0510]
ATGAAAAACAAGGTTCAACTTATTGGTAATGTAGGTAACACACCAGAGATTAAAGAGGTTAATAACACTAAAGTAGCTCA
TCTTTCTATAGCTACAAATGAAGTTTACAAAAATGCACAAGGAGAAAGAGTAGAGCAGACGGAATGGCATAAAGTAGTGG
CTTGGGGAGGACTAGCAGAAATTATAGAAAAGTATGTTACTAAAGGTAAAGAGATAGCTGTTGAGGGTAAATTAACCTAC
CGAAGTTATGATGATAAAGAAGGAAATAAACGCTACATTACCGAAATTGTAGCTAATGATATCCTGCTTTTGGGGAGGAC
TAAATAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.857

97.222

0.417
  ssb Glaesserella parasuis strain SC1401

42.308

96.296

0.407
  ssbB/cilA Streptococcus mitis NCTC 12261

41.905

97.222

0.407
  ssbB/cilA Streptococcus pneumoniae R6

41.905

97.222

0.407
  ssbB/cilA Streptococcus mitis SK321

41.905

97.222

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

41.905

97.222

0.407
  ssbB/cilA Streptococcus pneumoniae D39

41.905

97.222

0.407
  ssb Vibrio cholerae strain A1552

44.33

89.815

0.398
  ssb Neisseria gonorrhoeae MS11

41.346

96.296

0.398
  ssb Neisseria meningitidis MC58

41.346

96.296

0.398
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40

97.222

0.389
  ssbB Lactococcus lactis subsp. cremoris KW2

41.667

88.889

0.37
  ssbA Streptococcus mutans UA159

38.095

97.222

0.37