Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   JGX27_RS01730 Genome accession   NZ_CP077423
Coordinates   316001..316489 (+) Length   162 a.a.
NCBI ID   WP_013642686.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 311001..321489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS01730 (JGX27_01730) comX/sigX 316001..316489 (+) 489 WP_013642686.1 sigma-70 family RNA polymerase sigma factor Regulator
  JGX27_RS01735 (JGX27_01735) - 316601..318223 (-) 1623 WP_009853408.1 glycoside hydrolase family 5 protein -
  JGX27_RS01740 (JGX27_01740) - 318672..320033 (-) 1362 WP_009853409.1 aspartate kinase -
  JGX27_RS01745 (JGX27_01745) - 320127..320774 (+) 648 WP_009853410.1 HAD family phosphatase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 19467.40 Da        Isoelectric Point: 7.9985

>NTDB_id=581492 JGX27_RS01730 WP_013642686.1 316001..316489(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTQIEPFFNEFKN
NF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=581492 JGX27_RS01730 WP_013642686.1 316001..316489(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGG
ACGACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCT
GGCGGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTGGGAGCGGGAGCAAAAGAAAAACTAGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAAAAAT
AATTTCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.