Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   JGX27_RS01440 Genome accession   NZ_CP077423
Coordinates   257313..257798 (+) Length   161 a.a.
NCBI ID   WP_013642680.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 252313..262798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS01440 (JGX27_01440) comX/sigX 257313..257798 (+) 486 WP_013642680.1 sigma-70 family RNA polymerase sigma factor Regulator
  JGX27_RS01445 (JGX27_01445) - 257938..258204 (+) 267 WP_009853366.1 ACT domain-containing protein -
  JGX27_RS01450 (JGX27_01450) - 258216..259553 (+) 1338 WP_009853367.1 PFL family protein -
  JGX27_RS01455 (JGX27_01455) - 259777..260481 (+) 705 WP_009853368.1 histidine phosphatase family protein -
  JGX27_RS01460 (JGX27_01460) - 260465..261238 (+) 774 WP_009853369.1 M15 family metallopeptidase -
  JGX27_RS01465 (JGX27_01465) - 261235..261816 (+) 582 WP_009853370.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19377.32 Da        Isoelectric Point: 7.9986

>NTDB_id=581488 JGX27_RS01440 WP_013642680.1 257313..257798(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTQIEPFFNEFRE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=581488 JGX27_RS01440 WP_013642680.1 257313..257798(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGG
ACGACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCT
GGCGGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTGGGAGCGGGAGCAAAAGAAAAACTAGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAGGGAA
AAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.