Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SITYG_RS04485 Genome accession   NZ_AP014880
Coordinates   892388..894136 (+) Length   582 a.a.
NCBI ID   WP_096362788.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 887388..899136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS04465 (SITYG_08710) yihA 888054..888641 (+) 588 WP_003068868.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SITYG_RS04470 (SITYG_08720) - 888764..889471 (+) 708 WP_003077899.1 glucosaminidase domain-containing protein -
  SITYG_RS04475 (SITYG_08730) - 889647..890444 (+) 798 WP_096362786.1 formate/nitrite transporter family protein -
  SITYG_RS04480 (SITYG_08740) - 890662..892398 (+) 1737 WP_096362787.1 ABC transporter ATP-binding protein -
  SITYG_RS04485 (SITYG_08750) rcrQ 892388..894136 (+) 1749 WP_096362788.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS04490 (SITYG_08760) - 894255..895790 (-) 1536 WP_096362789.1 ATP-binding cassette domain-containing protein -
  SITYG_RS04495 (SITYG_08770) - 896165..896905 (-) 741 WP_003072905.1 amino acid ABC transporter ATP-binding protein -
  SITYG_RS04500 (SITYG_08780) - 896905..899082 (-) 2178 WP_096362790.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65304.86 Da        Isoelectric Point: 7.5589

>NTDB_id=56519 SITYG_RS04485 WP_096362788.1 892388..894136(+) (rcrQ) [Streptococcus intermedius strain TYG1620]
MKTRYSTSRLKRLASDLLQQRWLFLLATVGTIVQVVLTIYLPILIGEAIDSVLFPDAGRYLLPILSKMGIVIVANTAIQW
LNPLIYNQLIYSYSQKLRNAVIQKIHHLPLAYLDRQGSGDLVSRLTTDVEQLNNGLLMVFNQFFVGVLTILVTIVTMAKI
DFFMMALVLLLTPLSMLIADFIARKSYKLFQKQTTARGLQTQFIEESLSQESLIQSFNAQEQFIANFTKGNESYANYSQE
AIFYSSTVNPATRFVNALIYAMIVGFGAARIINGSSFTVGQLVTFLNYVNQYTKPFNDISSVMAELQSALACAERLYTIL
DEKELVEIGKEELMSETVFGAIHFEHICFGYEKNKPLIHDLNMTIPAGSKVAIVGPTGAGKSTLINLLMRFYNVDAGKIK
LDDRDITNYTRVSFRRQFGMVLQETWLKKTTIHDNIAFGRPEASREEVIAAAKAANAHFFIQQLPNGYDTYLADAGDSLS
QGQRQLLTIARVFLAVPKILILDEATSSIDTRTEVLIQKAFNKLMVGRTSFIIAHRLSTIQNVDIILVLVDGDIVEHGSH
QELMQAKGMYYQMQTAQESLVI

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=56519 SITYG_RS04485 WP_096362788.1 892388..894136(+) (rcrQ) [Streptococcus intermedius strain TYG1620]
ATGAAAACTAGATATTCTACAAGTAGGTTGAAGCGTCTAGCGAGTGATTTATTACAACAACGTTGGCTTTTTCTGTTAGC
CACAGTTGGAACGATTGTTCAAGTTGTTTTGACAATTTATTTGCCGATTTTGATTGGCGAGGCTATTGATAGTGTTTTAT
TTCCTGATGCTGGTCGATATTTGCTTCCAATTCTTTCAAAAATGGGGATTGTAATTGTTGCCAATACAGCAATTCAGTGG
CTTAATCCTTTAATCTATAATCAGTTAATTTATAGCTATAGTCAGAAACTTCGTAATGCTGTCATTCAAAAAATTCATCA
TCTTCCCTTGGCTTATCTTGATCGTCAAGGAAGTGGTGATTTAGTGAGTCGCTTAACAACGGATGTGGAGCAGTTAAATA
ATGGGTTGCTCATGGTTTTTAATCAATTTTTTGTAGGTGTACTGACTATTCTTGTAACAATTGTGACAATGGCAAAGATT
GACTTTTTCATGATGGCATTGGTCTTGCTATTAACTCCCTTATCTATGCTTATTGCAGATTTTATCGCTCGTAAAAGCTA
CAAGTTGTTTCAAAAACAGACAACAGCTCGGGGGCTTCAGACACAATTTATCGAAGAAAGTCTCTCTCAGGAAAGTTTGA
TTCAAAGTTTTAATGCTCAAGAGCAGTTCATTGCGAACTTTACAAAGGGGAATGAAAGCTATGCGAACTATTCTCAGGAA
GCGATTTTCTATTCCTCGACTGTCAACCCAGCAACGCGTTTTGTAAATGCTCTTATCTATGCGATGATTGTAGGATTTGG
TGCAGCTCGTATCATCAACGGTTCCAGTTTTACAGTTGGACAATTAGTAACTTTCTTAAATTATGTGAACCAATATACTA
AACCATTTAACGACATTTCGTCTGTCATGGCCGAATTACAAAGCGCCCTTGCTTGTGCAGAGCGCTTGTACACGATTTTA
GATGAAAAGGAACTTGTAGAAATTGGAAAAGAAGAACTTATGAGTGAGACTGTCTTTGGAGCTATTCATTTTGAACATAT
ATGTTTTGGTTATGAAAAAAACAAGCCCTTGATTCATGATTTAAATATGACCATTCCTGCGGGAAGCAAAGTTGCTATTG
TTGGGCCAACTGGCGCAGGAAAGTCTACCTTGATCAATCTTCTGATGCGCTTTTATAATGTGGATGCGGGCAAGATAAAG
CTAGACGATCGAGATATTACAAATTATACTCGAGTGTCCTTCCGCCGGCAGTTTGGCATGGTGTTACAAGAAACGTGGCT
GAAAAAGACCACGATCCATGATAATATTGCTTTTGGGCGACCAGAAGCGAGTCGAGAAGAAGTGATAGCAGCTGCTAAAG
CAGCGAATGCACATTTTTTTATTCAGCAATTACCGAATGGTTATGACACTTATCTAGCGGACGCAGGTGACTCTTTATCA
CAAGGACAACGGCAGTTATTGACGATTGCGCGTGTTTTCCTAGCTGTACCTAAAATATTAATTTTAGACGAAGCAACTTC
ATCCATTGATACACGAACCGAAGTGCTTATTCAAAAAGCTTTTAATAAGCTAATGGTAGGAAGAACCAGTTTTATCATTG
CTCATCGTCTGTCTACTATTCAAAATGTAGATATCATCTTGGTTTTGGTTGATGGTGATATTGTCGAACATGGCAGTCAT
CAGGAGTTGATGCAAGCGAAAGGTATGTATTATCAAATGCAGACAGCGCAGGAAAGTTTGGTTATTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(25-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.273

99.313

0.39

Multiple sequence alignment