Detailed information NTG0055586

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: HALHA_RS12770
• Genome accession: NC_019978
• Coordinates: 2626416..2626814 (-)
• Length: 132 a.a.
• NCBI ID: WP_015328192.1
• Uniprot ID: L0KBU6
• Organism: Halobacteroides halobius DSM 5150
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2621416..2631814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HALHA_RS12735 (Halha_2601)	-	2622063..2622368 (-)	306	WP_015328185.1	hypothetical protein	-
HALHA_RS12740 (Halha_2602)	-	2622374..2622844 (-)	471	WP_015328186.1	hypothetical protein	-
HALHA_RS12745 (Halha_2603)	dnaB	2622947..2624278 (-)	1332	WP_015328187.1	replicative DNA helicase	-
HALHA_RS12750 (Halha_2604)	rplI	2624377..2624823 (-)	447	WP_015328188.1	50S ribosomal protein L9	-
HALHA_RS12755 (Halha_2605)	-	2624851..2625741 (-)	891	WP_015328189.1	DUF2232 domain-containing protein	-
HALHA_RS12760 (Halha_2606)	-	2625752..2626072 (-)	321	WP_015328190.1	MazG-like family protein	-
HALHA_RS12765 (Halha_2607)	rpsR	2626175..2626384 (-)	210	WP_015328191.1	30S ribosomal protein S18	-
HALHA_RS12770 (Halha_2608)	ssbA	2626416..2626814 (-)	399	WP_015328192.1	single-stranded DNA-binding protein	Machinery gene
HALHA_RS12775 (Halha_2609)	rpsF	2626834..2627118 (-)	285	WP_015328193.1	30S ribosomal protein S6	-
HALHA_RS12780 (Halha_2610)	ychF	2627223..2628320 (-)	1098	WP_015328194.1	redox-regulated ATPase YchF	-
HALHA_RS12785 (Halha_2611)	-	2628347..2628529 (-)	183	WP_015328195.1	DUF951 domain-containing protein	-
HALHA_RS12790 (Halha_2612)	-	2628605..2629462 (-)	858	WP_015328196.1	mechanosensitive ion channel family protein	-
HALHA_RS12795 (Halha_2613)	alr	2629450..2630586 (-)	1137	WP_015328197.1	alanine racemase	-
HALHA_RS12800 (Halha_2614)	-	2630576..2631625 (-)	1050	WP_015328198.1	hypothetical protein	-

Sequence

Protein

• Length: 132 a.a.
• Molecular weight: 15092.51 Da
• Isoelectric Point: 4.5854

>NTDB_id=55586 HALHA_RS12770 WP_015328192.1 2626416..2626814(-) (ssbA) [Halobacteroides halobius DSM 5150]
MLNKVILIGRLTDDPELRYTPSGTAVCNFTLAVERNFRNQNGEYDTDFIDIVVWRKQAENCANYLSKGRLAAAEGRLQIR
SYENNEGQRRRVTEIVANSVQFLEYSNNNNNNNNQNNNQGQSSAEEDIDVPF

Nucleotide

• Length: 399 bp

>NTDB_id=55586 HALHA_RS12770 WP_015328192.1 2626416..2626814(-) (ssbA) [Halobacteroides halobius DSM 5150]
TTGCTAAATAAAGTTATATTAATTGGTAGGTTAACTGATGACCCTGAATTGCGATATACTCCAAGTGGAACGGCTGTATG
TAATTTTACATTAGCTGTTGAACGTAACTTTAGAAATCAAAATGGAGAATATGACACCGACTTTATTGATATTGTTGTTT
GGAGAAAGCAGGCAGAAAACTGTGCTAACTACTTATCTAAAGGTCGTTTAGCGGCGGCAGAAGGTAGATTGCAGATTAGG
TCTTATGAGAATAATGAAGGGCAACGGCGTAGAGTAACTGAAATTGTTGCAAATAGTGTGCAGTTTTTAGAGTATTCAAA
TAACAACAACAATAATAATAATCAAAACAACAATCAAGGACAATCTAGTGCGGAAGAAGATATAGATGTTCCGTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: L0KBU6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	65.421	81.061	0.53
ssb	Latilactobacillus sakei subsp. sakei 23K	54.808	78.788	0.432
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.424	100	0.424
ssbB/cilA	Streptococcus mitis NCTC 12261	41.481	100	0.424
ssbB/cilA	Streptococcus pneumoniae TIGR4	41.481	100	0.424
ssbB/cilA	Streptococcus pneumoniae D39	40.741	100	0.417
ssbB/cilA	Streptococcus pneumoniae R6	40.741	100	0.417
ssbB/cilA	Streptococcus mitis SK321	40.741	100	0.417
ssbB/cilA	Streptococcus pneumoniae Rx1	40.741	100	0.417
ssbB	Bacillus subtilis subsp. subtilis str. 168	51.923	78.788	0.409
ssbA	Streptococcus mutans UA159	40.909	100	0.409
ssb	Neisseria meningitidis MC58	43.902	93.182	0.409
ssb	Neisseria gonorrhoeae MS11	43.902	93.182	0.409