Detailed information NTG0553246

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: J7U24_RS09075
• Genome accession: NZ_CP072440
• Coordinates: 1734306..1734632 (-)
• Length: 108 a.a.
• NCBI ID: WP_002946126.1
• Uniprot ID: A0A0E2Q1B3
• Organism: Streptococcus thermophilus strain S24730
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1729306..1739632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U24_RS09030	-	1729572..1729910 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
J7U24_RS09035	-	1729954..1730229 (-)	276	WP_372434690.1	CAAX protease	-
J7U24_RS09040 (J7U24_09010)	-	1730241..1730438 (-)	198	WP_014727723.1	helix-turn-helix transcriptional regulator	-
J7U24_RS09045 (J7U24_09015)	-	1730687..1731880 (-)	1194	WP_014608740.1	acetate kinase	-
J7U24_RS09050 (J7U24_09020)	comYH	1731936..1732892 (-)	957	WP_372434691.1	class I SAM-dependent methyltransferase	Machinery gene
J7U24_RS09055 (J7U24_09025)	comGG	1732937..1733254 (-)	318	WP_011681685.1	competence type IV pilus minor pilin ComGG	-
J7U24_RS09060 (J7U24_09030)	comYF	1733232..1733669 (-)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7U24_RS09065 (J7U24_09035)	comGE	1733653..1733946 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
J7U24_RS09070 (J7U24_09040)	comYD	1733918..1734346 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
J7U24_RS09075 (J7U24_09045)	comYC	1734306..1734632 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
J7U24_RS09080 (J7U24_09050)	comYB	1734629..1735729 (-)	1101	WP_142350125.1	competence type IV pilus assembly protein ComGB	Machinery gene
J7U24_RS09085 (J7U24_09055)	comGA/cglA/cilD	1735611..1736552 (-)	942	WP_071417491.1	competence type IV pilus ATPase ComGA	Machinery gene
J7U24_RS09090 (J7U24_09060)	-	1736633..1736995 (-)	363	WP_014622006.1	DUF1033 family protein	-

Sequence

Protein

• Length: 108 a.a.
• Molecular weight: 11914.00 Da
• Isoelectric Point: 9.9219

>NTDB_id=553246 J7U24_RS09075 WP_002946126.1 1734306..1734632(-) (comYC) [Streptococcus thermophilus strain S24730]
MKLMLKKLNAVKLRAFTLIEMLVVLLIISILLLLFVPNLSKQKDSVKETGNAAVVKVVDSQAELYEMKNNKTASLAALVS
EGQITQKQADSYNDYYAKHGGESRSVAN

Nucleotide

• Length: 327 bp

>NTDB_id=553246 J7U24_RS09075 WP_002946126.1 1734306..1734632(-) (comYC) [Streptococcus thermophilus strain S24730]
ATGAAATTGATGTTAAAAAAATTGAATGCCGTTAAATTACGAGCCTTTACTCTGATTGAAATGCTAGTCGTACTTCTCAT
TATCAGTATTCTCCTTTTGCTCTTTGTTCCTAACTTAAGCAAGCAGAAGGATTCCGTTAAGGAAACTGGAAATGCGGCTG
TAGTCAAGGTCGTGGATTCTCAGGCAGAACTTTATGAAATGAAGAATAACAAGACAGCTAGCTTGGCAGCTCTTGTTTCA
GAAGGTCAAATTACGCAAAAACAGGCAGATTCATACAATGATTACTATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGC
CAATTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (14-34)

3D structure

• AlphaFold DB: A0A0E2Q1B3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus mutans UA140	69.231	96.296	0.667
comYC	Streptococcus mutans UA159	69.231	96.296	0.667
comYC	Streptococcus gordonii str. Challis substr. CH1	63.81	97.222	0.62
comGC/cglC	Streptococcus mitis SK321	62.264	98.148	0.611
comGC/cglC	Streptococcus mitis NCTC 12261	58.333	100	0.583
comGC/cglC	Streptococcus pneumoniae D39	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae R6	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae Rx1	58.491	98.148	0.574
comGC/cglC	Streptococcus pneumoniae TIGR4	58.491	98.148	0.574
comGC	Lactococcus lactis subsp. cremoris KW2	56.604	98.148	0.556
comYC	Streptococcus suis isolate S10	60.227	81.481	0.491
comGC	Staphylococcus aureus MW2	50	72.222	0.361
comGC	Staphylococcus aureus N315	50	72.222	0.361