Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   J7U24_RS09050 Genome accession   NZ_CP072440
Coordinates   1731936..1732892 (-) Length   318 a.a.
NCBI ID   WP_372434691.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24730     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1726936..1737892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U24_RS09015 (J7U24_08990) proC 1727496..1728266 (+) 771 WP_014727718.1 pyrroline-5-carboxylate reductase -
  J7U24_RS09020 (J7U24_08995) - 1728296..1728958 (-) 663 WP_014727719.1 CPBP family intramembrane glutamic endopeptidase -
  J7U24_RS09025 (J7U24_09000) - 1729055..1729498 (-) 444 WP_041829335.1 hypothetical protein -
  J7U24_RS09030 - 1729572..1729910 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  J7U24_RS09035 - 1729954..1730229 (-) 276 WP_372434690.1 CAAX protease -
  J7U24_RS09040 (J7U24_09010) - 1730241..1730438 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  J7U24_RS09045 (J7U24_09015) - 1730687..1731880 (-) 1194 WP_014608740.1 acetate kinase -
  J7U24_RS09050 (J7U24_09020) comYH 1731936..1732892 (-) 957 WP_372434691.1 class I SAM-dependent methyltransferase Machinery gene
  J7U24_RS09055 (J7U24_09025) comGG 1732937..1733254 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  J7U24_RS09060 (J7U24_09030) comYF 1733232..1733669 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7U24_RS09065 (J7U24_09035) comGE 1733653..1733946 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  J7U24_RS09070 (J7U24_09040) comYD 1733918..1734346 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7U24_RS09075 (J7U24_09045) comYC 1734306..1734632 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  J7U24_RS09080 (J7U24_09050) comYB 1734629..1735729 (-) 1101 WP_142350125.1 competence type IV pilus assembly protein ComGB Machinery gene
  J7U24_RS09085 (J7U24_09055) comGA/cglA/cilD 1735611..1736552 (-) 942 WP_071417491.1 competence type IV pilus ATPase ComGA Machinery gene
  J7U24_RS09090 (J7U24_09060) - 1736633..1736995 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35919.12 Da        Isoelectric Point: 4.7891

>NTDB_id=553243 J7U24_RS09050 WP_372434691.1 1731936..1732892(-) (comYH) [Streptococcus thermophilus strain S24730]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKYIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=553243 J7U24_RS09050 WP_372434691.1 1731936..1732892(-) (comYH) [Streptococcus thermophilus strain S24730]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTATATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.571

99.057

0.679
  comYH Streptococcus mutans UA140

68.571

99.057

0.679