NTDB

Overview

Name	comYC	Type	Machinery gene
Locus tag	JZ789_RS00795	Genome accession	NZ_CP071806
Coordinates	129544..129825 (+)	Length	93 a.a.
NCBI ID	WP_009909092.1	Uniprot ID	A0A116MYU4
Organism	Streptococcus suis strain GX69
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 124544..134825

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZ789_RS00775 (JZ789_00775)	-	126207..126572 (+)	366	WP_024417409.1	DUF1033 family protein	-
JZ789_RS00780 (JZ789_00780)	-	126607..127557 (-)	951	WP_170244797.1	S66 peptidase family protein	-
JZ789_RS00785 (JZ789_00785)	comYA	127643..128593 (+)	951	WP_024417411.1	competence type IV pilus ATPase ComGA	Machinery gene
JZ789_RS00790 (JZ789_00790)	comYB	128505..129542 (+)	1038	WP_255195823.1	competence type IV pilus assembly protein ComGB	Machinery gene
JZ789_RS00795 (JZ789_00795)	comYC	129544..129825 (+)	282	WP_009909092.1	competence type IV pilus major pilin ComGC	Machinery gene
JZ789_RS00800 (JZ789_00800)	comGD	129806..130213 (+)	408	WP_024387070.1	competence type IV pilus minor pilin ComGD	-
JZ789_RS00805 (JZ789_00805)	comYE	130185..130478 (+)	294	WP_024390433.1	competence type IV pilus minor pilin ComGE	Machinery gene
JZ789_RS00810 (JZ789_00810)	comGF/cglF	130465..130899 (+)	435	WP_063725150.1	competence type IV pilus minor pilin ComGF	Machinery gene
JZ789_RS00815 (JZ789_00815)	comGG	130877..131287 (+)	411	WP_009909099.1	competence type IV pilus minor pilin ComGG	-
JZ789_RS00820 (JZ789_00820)	comYH	131344..132297 (+)	954	WP_024409299.1	class I SAM-dependent methyltransferase	Machinery gene
JZ789_RS00825 (JZ789_00825)	-	132347..133534 (+)	1188	WP_014637319.1	acetate kinase	-
JZ789_RS00830 (JZ789_00830)	-	133849..134400 (+)	552	WP_024417413.1	folate family ECF transporter S component	-

Sequence

Protein

Download Length: 93 a.a. Molecular weight: 10320.28 Da Isoelectric Point: 8.4284

                                >NTDB_id=547938 JZ789_RS00795 WP_009909092.1 129544..129825(+) (comYC) [Streptococcus suis strain GX69]

MKKLVEMKVKGFTLVEMLVVLGIISLLLLLFVPNLSQQKDAIQKKGDAAVVKVVESQMELYELEHDKEATVADLQAAGYI

TEKQAKQYAAAKK

Nucleotide

Download Length: 282 bp

                                >NTDB_id=547938 JZ789_RS00795 WP_009909092.1 129544..129825(+) (comYC) [Streptococcus suis strain GX69]

ATGAAAAAATTAGTTGAAATGAAGGTAAAAGGGTTCACTCTGGTGGAAATGTTAGTCGTTTTGGGGATCATTAGCCTGCT

CTTGCTCCTTTTTGTGCCAAATTTGAGCCAGCAGAAGGATGCTATTCAGAAGAAGGGGGATGCGGCTGTTGTCAAAGTAG

TGGAGAGCCAGATGGAGCTCTATGAATTGGAACATGACAAGGAAGCAACGGTGGCAGACTTGCAGGCAGCTGGCTACATC

ACTGAAAAACAAGCAAAACAGTATGCTGCGGCGAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A116MYU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYC	Streptococcus suis isolate S10	96.774	100	0.968
comGC/cglC	Streptococcus mitis SK321	67.059	91.398	0.613
comGC/cglC	Streptococcus mitis NCTC 12261	67.059	91.398	0.613
comYC	Streptococcus gordonii str. Challis substr. CH1	62.637	97.849	0.613
comGC/cglC	Streptococcus pneumoniae R6	69.136	87.097	0.602
comGC/cglC	Streptococcus pneumoniae D39	69.136	87.097	0.602
comGC/cglC	Streptococcus pneumoniae TIGR4	69.136	87.097	0.602
comGC/cglC	Streptococcus pneumoniae Rx1	69.136	87.097	0.602
comYC	Streptococcus mutans UA140	60.227	94.624	0.57
comYC	Streptococcus mutans UA159	60.227	94.624	0.57
comGC	Lactococcus lactis subsp. cremoris KW2	57.955	94.624	0.548
comGC	Staphylococcus aureus N315	50	83.871	0.419
comGC	Staphylococcus aureus MW2	50	83.871	0.419
comGC	Bacillus subtilis subsp. subtilis str. 168	49.333	80.645	0.398

Detailed information NTG0547938