Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   JZX84_RS00900 Genome accession   NZ_CP071300
Coordinates   135822..136127 (+) Length   101 a.a.
NCBI ID   WP_029343537.1    Uniprot ID   -
Organism   Lactococcus sp. LG592     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 130822..141127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZX84_RS00880 (JZX84_00880) guaB 131932..133413 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  JZX84_RS00885 (JZX84_00885) rpsU 133539..133715 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  JZX84_RS00890 (JZX84_00890) comGA 133901..134845 (+) 945 WP_195916935.1 competence type IV pilus ATPase ComGA Machinery gene
  JZX84_RS00895 (JZX84_00895) comGB 134784..135803 (+) 1020 WP_255566448.1 competence type IV pilus assembly protein ComGB Machinery gene
  JZX84_RS00900 (JZX84_00900) comYC 135822..136127 (+) 306 WP_029343537.1 competence type IV pilus major pilin ComGC Machinery gene
  JZX84_RS00905 (JZX84_00905) comGD 136102..136518 (+) 417 WP_019336004.1 competence type IV pilus minor pilin ComGD Machinery gene
  JZX84_RS10870 - 136550..136648 (+) 99 WP_255566393.1 hypothetical protein -
  JZX84_RS00910 (JZX84_00910) comGE 136621..136785 (+) 165 WP_019336003.1 competence system putative prepilin ComGE -
  JZX84_RS10710 comYF 136940..137206 (+) 267 WP_255566449.1 competence type IV pilus minor pilin ComGF Machinery gene
  JZX84_RS00920 (JZX84_00920) - 137438..138283 (+) 846 WP_019336001.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  JZX84_RS00925 (JZX84_00925) - 138354..139238 (-) 885 WP_019336000.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11373.35 Da        Isoelectric Point: 10.2213

>NTDB_id=544741 JZX84_RS00900 WP_029343537.1 135822..136127(+) (comYC) [Lactococcus sp. LG592]
MKKKRIKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPNLGKLVSDGLITQK
QADSYNDYYTKNPNAKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=544741 JZX84_RS00900 WP_029343537.1 135822..136127(+) (comYC) [Lactococcus sp. LG592]
ATGAAAAAAAAGAGAATCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTGTTACTTTTATT
GTTTGTCCCAAATTTGGCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAGGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAACTTAGGGAAGCTTGTCTCCGACGGTTTAATTACGCAAAAA
CAAGCCGATAGCTACAATGATTATTATACCAAGAACCCTAATGCAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

64.356

100

0.644
  comYC Streptococcus mutans UA159

64.356

100

0.644
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comGC/cglC Streptococcus mitis SK321

63.636

98.02

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus pneumoniae D39

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae Rx1

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae R6

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae TIGR4

59.596

98.02

0.584
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

56.79

80.198

0.455
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396