Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   JZX84_RS00905 Genome accession   NZ_CP071300
Coordinates   136102..136518 (+) Length   138 a.a.
NCBI ID   WP_019336004.1    Uniprot ID   -
Organism   Lactococcus sp. LG592     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 131102..141518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZX84_RS00880 (JZX84_00880) guaB 131932..133413 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  JZX84_RS00885 (JZX84_00885) rpsU 133539..133715 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  JZX84_RS00890 (JZX84_00890) comGA 133901..134845 (+) 945 WP_195916935.1 competence type IV pilus ATPase ComGA Machinery gene
  JZX84_RS00895 (JZX84_00895) comGB 134784..135803 (+) 1020 WP_255566448.1 competence type IV pilus assembly protein ComGB Machinery gene
  JZX84_RS00900 (JZX84_00900) comYC 135822..136127 (+) 306 WP_029343537.1 competence type IV pilus major pilin ComGC Machinery gene
  JZX84_RS00905 (JZX84_00905) comGD 136102..136518 (+) 417 WP_019336004.1 competence type IV pilus minor pilin ComGD Machinery gene
  JZX84_RS10870 - 136550..136648 (+) 99 WP_255566393.1 hypothetical protein -
  JZX84_RS00910 (JZX84_00910) comGE 136621..136785 (+) 165 WP_019336003.1 competence system putative prepilin ComGE -
  JZX84_RS10710 comYF 136940..137206 (+) 267 WP_255566449.1 competence type IV pilus minor pilin ComGF Machinery gene
  JZX84_RS00920 (JZX84_00920) - 137438..138283 (+) 846 WP_019336001.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  JZX84_RS00925 (JZX84_00925) - 138354..139238 (-) 885 WP_019336000.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15767.39 Da        Isoelectric Point: 9.9392

>NTDB_id=544742 JZX84_RS00905 WP_019336004.1 136102..136518(+) (comGD) [Lactococcus sp. LG592]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSH
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=544742 JZX84_RS00905 WP_019336004.1 136102..136518(+) (comGD) [Lactococcus sp. LG592]
ATGCAAAACGTAATGTACCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGTCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAACGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAC
GAGGAAGTACTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAACTATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

49.275

100

0.493
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

41.085

93.478

0.384
  comGD/cglD Streptococcus pneumoniae TIGR4

40.31

93.478

0.377
  comGD/cglD Streptococcus mitis NCTC 12261

39.231

94.203

0.37
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362