Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | JZX84_RS10710 | Genome accession | NZ_CP071300 |
| Coordinates | 136940..137206 (+) | Length | 88 a.a. |
| NCBI ID | WP_255566449.1 | Uniprot ID | - |
| Organism | Lactococcus sp. LG592 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 131940..142206
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JZX84_RS00885 (JZX84_00885) | rpsU | 133539..133715 (+) | 177 | WP_003134539.1 | 30S ribosomal protein S21 | - |
| JZX84_RS00890 (JZX84_00890) | comGA | 133901..134845 (+) | 945 | WP_195916935.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| JZX84_RS00895 (JZX84_00895) | comGB | 134784..135803 (+) | 1020 | WP_255566448.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| JZX84_RS00900 (JZX84_00900) | comYC | 135822..136127 (+) | 306 | WP_029343537.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| JZX84_RS00905 (JZX84_00905) | comGD | 136102..136518 (+) | 417 | WP_019336004.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| JZX84_RS10870 | - | 136550..136648 (+) | 99 | WP_255566393.1 | hypothetical protein | - |
| JZX84_RS00910 (JZX84_00910) | comGE | 136621..136785 (+) | 165 | WP_019336003.1 | competence system putative prepilin ComGE | - |
| JZX84_RS10710 | comYF | 136940..137206 (+) | 267 | WP_255566449.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| JZX84_RS00920 (JZX84_00920) | - | 137438..138283 (+) | 846 | WP_019336001.1 | metal ABC transporter solute-binding protein, Zn/Mn family | - |
| JZX84_RS00925 (JZX84_00925) | - | 138354..139238 (-) | 885 | WP_019336000.1 | RluA family pseudouridine synthase | - |
| JZX84_RS00930 (JZX84_00930) | - | 139314..141602 (+) | 2289 | WP_019335999.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 10169.57 Da Isoelectric Point: 10.1554
>NTDB_id=544783 JZX84_RS10710 WP_255566449.1 136940..137206(+) (comYF) [Lactococcus sp. LG592]
MRSELEGASLDKVENNYLYVRKNVNLRFGLSSKGDFRKTNANGRGYQPMIHHVKNVKISQEGEQVKIILSFEKGGDRIFL
YKFSEKES
MRSELEGASLDKVENNYLYVRKNVNLRFGLSSKGDFRKTNANGRGYQPMIHHVKNVKISQEGEQVKIILSFEKGGDRIFL
YKFSEKES
Nucleotide
Download Length: 267 bp
>NTDB_id=544783 JZX84_RS10710 WP_255566449.1 136940..137206(+) (comYF) [Lactococcus sp. LG592]
CTGAGAAGCGAACTTGAGGGAGCAAGCTTAGATAAGGTGGAAAATAACTATCTTTATGTCCGCAAAAATGTCAATCTAAG
ATTTGGACTTTCCTCCAAAGGAGATTTTCGGAAAACTAATGCTAATGGGCGAGGTTATCAACCCATGATCCATCATGTAA
AAAATGTTAAAATCAGCCAGGAGGGAGAGCAGGTAAAAATTATCTTGTCTTTTGAAAAAGGAGGAGACCGCATATTTCTT
TACAAGTTCTCAGAAAAAGAAAGTTAA
CTGAGAAGCGAACTTGAGGGAGCAAGCTTAGATAAGGTGGAAAATAACTATCTTTATGTCCGCAAAAATGTCAATCTAAG
ATTTGGACTTTCCTCCAAAGGAGATTTTCGGAAAACTAATGCTAATGGGCGAGGTTATCAACCCATGATCCATCATGTAA
AAAATGTTAAAATCAGCCAGGAGGGAGAGCAGGTAAAAATTATCTTGTCTTTTGAAAAAGGAGGAGACCGCATATTTCTT
TACAAGTTCTCAGAAAAAGAAAGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA140 |
51.724 |
98.864 |
0.511 |
| comYF | Streptococcus mutans UA159 |
50.575 |
98.864 |
0.5 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
50.588 |
96.591 |
0.489 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae D39 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae R6 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
35.955 |
100 |
0.364 |