Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   J0J34_RS00730 Genome accession   NZ_CP071290
Coordinates   148030..148335 (+) Length   101 a.a.
NCBI ID   WP_016171026.1    Uniprot ID   -
Organism   Lactococcus garvieae strain LG791     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143030..153335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J34_RS00710 (J0J34_00710) guaB 144142..145623 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  J0J34_RS00715 (J0J34_00715) rpsU 145746..145922 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  J0J34_RS00720 (J0J34_00720) comGA 146109..147053 (+) 945 WP_206886610.1 competence type IV pilus ATPase ComGA Machinery gene
  J0J34_RS00725 (J0J34_00725) comGB 146992..148011 (+) 1020 WP_276512710.1 competence type IV pilus assembly protein ComGB Machinery gene
  J0J34_RS00730 (J0J34_00730) comYC 148030..148335 (+) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  J0J34_RS10415 comGD 148310..148726 (+) 417 WP_014024177.1 competence type IV pilus minor pilin ComGD Machinery gene
  J0J34_RS10420 (J0J34_00735) comGE 148758..148991 (+) 234 WP_276512708.1 competence type IV pilus minor pilin ComGE -
  J0J34_RS00740 (J0J34_00740) comYF 148972..149412 (+) 441 WP_014024179.1 competence type IV pilus minor pilin ComGF Machinery gene
  J0J34_RS00745 (J0J34_00745) - 149645..150490 (+) 846 WP_014024181.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  J0J34_RS00750 (J0J34_00750) - 150576..151445 (-) 870 WP_014570921.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11397.28 Da        Isoelectric Point: 9.9218

>NTDB_id=544607 J0J34_RS00730 WP_016171026.1 148030..148335(+) (comYC) [Lactococcus garvieae strain LG791]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLSKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPSLGKLVSGGLITQK
QADSYNDYYTKNPNEKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=544607 J0J34_RS00730 WP_016171026.1 148030..148335(+) (comYC) [Lactococcus garvieae strain LG791]
ATGGAAAAAAAGAGGTTCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTCTTACTTTTATT
GTTTGTCCCAAATTTGTCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAAGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAGCTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAA
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCAAATGAAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comYC Streptococcus mutans UA140

67.368

94.059

0.634
  comYC Streptococcus mutans UA159

67.368

94.059

0.634
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus mitis SK321

61.616

98.02

0.604
  comGC/cglC Streptococcus pneumoniae Rx1

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae D39

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae TIGR4

57.576

98.02

0.564
  comGC/cglC Streptococcus pneumoniae R6

57.576

98.02

0.564
  comGC/cglC Streptococcus mitis NCTC 12261

61.538

90.099

0.554
  comYC Streptococcus suis isolate S10

58.025

80.198

0.465
  comGC Staphylococcus aureus MW2

49.367

78.218

0.386
  comGC Staphylococcus aureus N315

49.367

78.218

0.386