Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   SDSE_RS20010 Genome accession   NC_019042
Coordinates   1921960..1923012 (-) Length   350 a.a.
NCBI ID   WP_012767556.1    Uniprot ID   A0A9X8T4H4
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1916960..1928012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS19985 (S_dysgal_equisimilis_AC2713_1978) rimI 1917531..1917956 (-) 426 WP_015058054.1 ribosomal protein S18-alanine N-acetyltransferase -
  SDSE_RS19990 (S_dysgal_equisimilis_AC2713_1979) tsaB 1917958..1918656 (-) 699 WP_003062223.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  SDSE_RS19995 (S_dysgal_equisimilis_AC2713_1980) - 1918942..1919172 (+) 231 WP_015058055.1 DNA-dependent RNA polymerase subunit epsilon -
  SDSE_RS20000 (S_dysgal_equisimilis_AC2713_1981) rnjA 1919174..1920856 (+) 1683 WP_003056700.1 ribonuclease J1 -
  SDSE_RS20005 (S_dysgal_equisimilis_AC2713_1982) amiF 1921035..1921967 (-) 933 WP_003060110.1 ATP-binding cassette domain-containing protein Regulator
  SDSE_RS20010 (S_dysgal_equisimilis_AC2713_1983) oppD 1921960..1923012 (-) 1053 WP_012767556.1 ABC transporter ATP-binding protein Regulator
  SDSE_RS20015 (S_dysgal_equisimilis_AC2713_1984) - 1923024..1924055 (-) 1032 WP_003058013.1 ABC transporter permease -
  SDSE_RS20020 (S_dysgal_equisimilis_AC2713_1985) - 1924065..1924979 (-) 915 WP_003052794.1 ABC transporter permease -
  SDSE_RS20025 (S_dysgal_equisimilis_AC2713_1986) - 1925247..1926902 (-) 1656 WP_003058031.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38667.36 Da        Isoelectric Point: 5.8490

>NTDB_id=54323 SDSE_RS20010 WP_012767556.1 1921960..1923012(-) (oppD) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MTNETILSVKNLHVDFKTYAGDVKAIRDISFDLKKGETLAIVGESGSGKSVTTRTLMGLNAKNANLSGEIDFKGKKLNAL
KEEEWVKVRGKEIAMIFQDPMTSLDPTMKIGMQIAEAILIHENISKQKALSRALELMHQVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPEILIADEPTTALDVTIQAQILKLMKEIQQQTESSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTASGSLESIPGTPPDLLNPPKGDAFAARNEFALDIDHVEAPPMFKVSDTHYAATWLL
DERAPKVTPPVQIQKRWAKWQKREGGKLNE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=54323 SDSE_RS20010 WP_012767556.1 1921960..1923012(-) (oppD) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGACAAACGAAACCATTTTAAGTGTTAAAAACCTCCACGTTGATTTCAAAACCTATGCAGGGGATGTGAAAGCTATTCG
CGATATTAGTTTTGACCTCAAAAAAGGAGAAACGCTTGCGATTGTTGGGGAATCTGGATCAGGAAAATCAGTGACCACTA
GGACCTTGATGGGCTTAAATGCTAAAAATGCTAACCTTTCTGGGGAAATTGATTTTAAAGGAAAAAAACTCAATGCCCTT
AAGGAAGAAGAATGGGTTAAGGTACGTGGTAAAGAAATTGCCATGATTTTCCAAGACCCAATGACCAGTCTCGATCCAAC
GATGAAAATCGGAATGCAAATTGCTGAAGCTATTTTGATTCATGAGAATATCAGTAAGCAAAAAGCCTTGAGTCGTGCTC
TTGAATTGATGCATCAAGTAGGTATTCCAAATGCTGAAGAGCATATTAATGATTATCCACATCAGTGGTCAGGTGGGATG
CGTCAGCGTGCTGTGATTGCTATCGCTCTCGCAGCTAATCCAGAAATCCTGATTGCTGATGAACCGACCACAGCACTTGA
TGTTACCATTCAGGCACAAATCTTGAAATTAATGAAAGAAATCCAACAACAGACGGAATCATCTATTATTTTCATTACCC
ATGACCTTGGAGTTGTGGCTGGTATGGCTGACCGTGTCGCGGTAATGTATGCTGGAAAAATTGTTGAGTATGGAACGGTG
GATGAAGTCTTTTATAACCCGCAACACCCTTATACATGGGGCTTGCTTAATTCTATGCCAACCACAGATACCGCCTCAGG
GAGTTTAGAATCTATTCCAGGAACGCCGCCTGACTTGCTTAATCCTCCTAAGGGAGATGCTTTTGCAGCCCGCAATGAAT
TTGCCTTGGATATTGATCATGTGGAGGCTCCGCCGATGTTTAAGGTCAGCGACACCCATTATGCGGCAACTTGGTTATTA
GATGAGCGAGCGCCCAAAGTCACTCCGCCAGTTCAAATTCAAAAACGATGGGCAAAATGGCAAAAACGAGAAGGAGGCAA
GCTAAATGAATGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.429

100

0.794
  amiE Streptococcus salivarius strain HSISS4

55.394

98

0.543
  amiE Streptococcus thermophilus LMG 18311

56.325

94.857

0.534
  amiE Streptococcus thermophilus LMD-9

56.325

94.857

0.534

Multiple sequence alignment