Detailed information NTG0054322

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SDSE_RS20005
• Genome accession: NC_019042
• Coordinates: 1921035..1921967 (-)
• Length: 310 a.a.
• NCBI ID: WP_003060110.1
• Uniprot ID: A0A9X8T5Q4
• Organism: Streptococcus dysgalactiae subsp. equisimilis AC-2713
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1916035..1926967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDSE_RS19980 (S_dysgal_equisimilis_AC2713_1977)	tsaD	1916525..1917541 (-)	1017	WP_003056674.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
SDSE_RS19985 (S_dysgal_equisimilis_AC2713_1978)	rimI	1917531..1917956 (-)	426	WP_015058054.1	ribosomal protein S18-alanine N-acetyltransferase	-
SDSE_RS19990 (S_dysgal_equisimilis_AC2713_1979)	tsaB	1917958..1918656 (-)	699	WP_003062223.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SDSE_RS19995 (S_dysgal_equisimilis_AC2713_1980)	-	1918942..1919172 (+)	231	WP_015058055.1	DNA-dependent RNA polymerase subunit epsilon	-
SDSE_RS20000 (S_dysgal_equisimilis_AC2713_1981)	rnjA	1919174..1920856 (+)	1683	WP_003056700.1	ribonuclease J1	-
SDSE_RS20005 (S_dysgal_equisimilis_AC2713_1982)	amiF	1921035..1921967 (-)	933	WP_003060110.1	ATP-binding cassette domain-containing protein	Regulator
SDSE_RS20010 (S_dysgal_equisimilis_AC2713_1983)	oppD	1921960..1923012 (-)	1053	WP_012767556.1	ABC transporter ATP-binding protein	Regulator
SDSE_RS20015 (S_dysgal_equisimilis_AC2713_1984)	-	1923024..1924055 (-)	1032	WP_003058013.1	ABC transporter permease	-
SDSE_RS20020 (S_dysgal_equisimilis_AC2713_1985)	-	1924065..1924979 (-)	915	WP_003052794.1	ABC transporter permease	-
SDSE_RS20025 (S_dysgal_equisimilis_AC2713_1986)	-	1925247..1926902 (-)	1656	WP_003058031.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35203.02 Da
• Isoelectric Point: 6.6437

>NTDB_id=54322 SDSE_RS20005 WP_003060110.1 1921035..1921967(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MNDNRKKLVELKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEADQYRREYH

Nucleotide

• Length: 933 bp

>NTDB_id=54322 SDSE_RS20005 WP_003060110.1 1921035..1921967(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGAATGATAATCGAAAGAAATTAGTAGAGTTAAAAAATGTCTCCTTAACTTTCAATAAGGGAAAGAAAAACGAAGTCAA
AGCCATTGATAATGTGAGCTTTGATATTTATGAAGGGGAAGTGTTTGGACTGGTTGGGGAATCCGGATCAGGAAAAACAA
CTGTTGGTCGCGCCATTTTAAAGCTTTATGATATTAATGAAGGGGAAATTATTTTTAATGGTGAAACCGTTTCTCATTTG
AAAGGGAAAGACTTGCGGACCTTTCGTAAGGATGCTCAGATGATTTTCCAAGATCCTCAGGCTAGTCTTAACGGCCGTAT
GAAAATCAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGACTCACAGCTTCAAAGGCAGAACGAGAAGAACGCGTGC
AAGAACTCCTTGATTTGGTTGGGTTGAACAAGGACCATTTGACACGTTACCCCCATGAATTTTCTGGTGGTCAACGTCAA
CGGATTGGGATTGCCCGTGCTTTGGCAGTTAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
GATTCAGGCCCAGGTAGTTAACTTGATGCAAAAGCTTCAGCACAAACGTGGATTGACCTATCTTTTTATTGCCCATGACT
TGTCAATGGTCAAATACATTTCTGACCGTATCGGAGTCATGCACTGGGGTAAAATGTTGGAGATTGGGACCTCAGATGAT
GTCTATAATCATCCTATTCATCCTTATACCAAGAGCCTACTCTCGGCTATTCCTGAACCAGATCCAGACAAAGAACGTCA
GCGGGTGGCTGATGTATATGATCCAAGTCAAGAATTGGACGGCCAAGAACGTCAGATGCATGAGATTACGCCAGGCCATT
TTGTTTTAGCTACCCAAGAAGAAGCAGACCAATATCGACGGGAGTATCATTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.098	98.387	0.532
amiF	Streptococcus thermophilus LMG 18311	53.77	98.387	0.529
amiF	Streptococcus salivarius strain HSISS4	53.443	98.387	0.526