Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SCAZ3_RS04030 Genome accession   NZ_AIDX01000001
Coordinates   886373..886969 (-) Length   198 a.a.
NCBI ID   WP_003045733.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 881373..891969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS04000 (SCAZ3_11075) - 881629..881898 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  SCAZ3_RS04005 (SCAZ3_11080) spx 882010..882408 (-) 399 WP_003045722.1 transcriptional regulator Spx -
  SCAZ3_RS04010 (SCAZ3_11090) recA 882806..883942 (-) 1137 WP_003045726.1 recombinase RecA Machinery gene
  SCAZ3_RS04015 (SCAZ3_11095) cinA 884047..885318 (-) 1272 WP_003045727.1 competence/damage-inducible protein A Machinery gene
  SCAZ3_RS12390 - 885435..885593 (-) 159 WP_223824822.1 VOC family protein -
  SCAZ3_RS04025 (SCAZ3_11105) - 885791..886363 (-) 573 WP_003045731.1 DNA-3-methyladenine glycosylase I -
  SCAZ3_RS04030 (SCAZ3_11110) ruvA 886373..886969 (-) 597 WP_003045733.1 Holliday junction branch migration protein RuvA Machinery gene
  SCAZ3_RS04035 (SCAZ3_11115) - 886953..888191 (-) 1239 WP_003045734.1 MDR family MFS transporter -
  SCAZ3_RS04040 (SCAZ3_11120) hexB 888202..890184 (-) 1983 WP_039994902.1 DNA mismatch repair endonuclease MutL Machinery gene
  SCAZ3_RS04045 (SCAZ3_11125) - 890279..891430 (-) 1152 WP_003045739.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21859.21 Da        Isoelectric Point: 6.4933

>NTDB_id=54324 SCAZ3_RS04030 WP_003045733.1 886373..886969(-) (ruvA) [Streptococcus canis FSL Z3-227]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGKTKVNNHTAGNPQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=54324 SCAZ3_RS04030 WP_003045733.1 886373..886969(-) (ruvA) [Streptococcus canis FSL Z3-227]
ATGTACGATTATATTAAAGGTCAGTTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACCAATGGACTAGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTATCTGCATCAAGTTATTCGTG
AGGATGCTCACTTGTTGTTTGGCTTTCACACAGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTCTCAGGTATT
GGTCCAACAACAGCCTTAGCTATCGTTGCGGTTGATGATAATCAGGGACTTGTTAATGCCATTGATAACAGTGACATTAA
ATACTTGATGAAATTTCCTAAGATTGGTAAAAAAACAGCTCAGCAAATGGTGCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAAGACCAAAGTGAACAACCATACAGCAGGTAATCCTCAACTAGACGAAGCGATCGAAGCTCTC
CTTGCCCTCGGTTATAAGGCAACAGAATTGAAGAAAATTCGTGCTTTCTTTGAAGGAACTTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae R6

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae D39

67.005

99.495

0.667
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.394

100

0.414

Multiple sequence alignment