Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SDSE_RS20250 Genome accession   NC_019042
Coordinates   1971529..1972890 (-) Length   453 a.a.
NCBI ID   WP_041781622.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1966529..1977890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS20225 (S_dysgal_equisimilis_AC2713_2026) - 1967250..1968518 (-) 1269 WP_012767572.1 MFS transporter -
  SDSE_RS20230 (S_dysgal_equisimilis_AC2713_2027) - 1968613..1969314 (-) 702 WP_003053382.1 hypothetical protein -
  SDSE_RS20235 - 1969318..1969764 (-) 447 Protein_1860 LytTR family DNA-binding domain-containing protein -
  SDSE_RS20240 (S_dysgal_equisimilis_AC2713_2029) - 1969993..1970709 (-) 717 WP_015058072.1 TIGR00266 family protein -
  SDSE_RS20245 (S_dysgal_equisimilis_AC2713_2030) - 1970845..1971339 (-) 495 WP_003053380.1 carbonic anhydrase -
  SDSE_RS20250 (S_dysgal_equisimilis_AC2713_2031) radA 1971529..1972890 (-) 1362 WP_041781622.1 DNA repair protein RadA Machinery gene
  SDSE_RS20255 (S_dysgal_equisimilis_AC2713_2032) - 1972973..1973419 (-) 447 WP_003053378.1 dUTP diphosphatase -
  SDSE_RS20260 (S_dysgal_equisimilis_AC2713_2033) - 1973527..1974294 (-) 768 WP_015058074.1 epoxyqueuosine reductase QueH -
  SDSE_RS20265 (S_dysgal_equisimilis_AC2713_2034) - 1974413..1976197 (-) 1785 WP_015058075.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49365.68 Da        Isoelectric Point: 6.0944

>NTDB_id=54324 SDSE_RS20250 WP_041781622.1 1971529..1972890(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIISPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNGIEVVGVTTVGQVLKVVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=54324 SDSE_RS20250 WP_041781622.1 1971529..1972890(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATAGCAAAGAAAAAAGCAACCTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTTGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCTTGCTCTTGCA
GGTATCTACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTTCGGA
GTGAGCGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTGAATCCAGATTTCTTGATTATTGATTCTATCCAAACCATTATAAGTCCTGATATTACAGGTGTTCAAGGATCAGT
GAGTCAGGTGAGAGAAGTTACTGCCGAATTGATGCAACTTGCAAAGACTAACAACATTGCAACCTTTATTGTAGGACATG
TTACCAAGGAAGGAACCTTAGCTGGTCCCCGTATGTTAGAACATATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCATACTTTTCGCATCTTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGCATTTTTGAAATGCAATC
AGCTGGACTTGTTGAGGTCTTAAACCCAAGCCAAGTTTTTCTTGAAGAACGATTAGATGGTGCTACAGGCTCCGCCATTG
TGGTGACCATGGAGGGTAGTCGTCCAATTTTAGCGGAAGTCCAATCTTTGGTAACCCCAACCGTTTTTGGTAATGCTAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATCATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGCTAGACGAACCTGCCATTGATTTAGCTGTAGCCGTAGCCA
TCGCATCCAGTTATAAAGAAAAACCAACCAACCCTCAGGAAGCCTTCTTAGGAGAGATTGGGTTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGAATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGGTATTGAAGTGGTGGGTGTGACAACAGTTGGTCAGGTTTTAAAGGTCGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(57-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.504

99.779

0.863
  radA Streptococcus pneumoniae Rx1

86.283

99.779

0.861
  radA Streptococcus pneumoniae D39

86.283

99.779

0.861
  radA Streptococcus pneumoniae R6

86.283

99.779

0.861
  radA Streptococcus pneumoniae TIGR4

86.283

99.779

0.861
  radA Streptococcus mitis SK321

86.283

99.779

0.861
  radA Bacillus subtilis subsp. subtilis str. 168

61.926

100

0.625

Multiple sequence alignment