Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   JVB21_RS08810 Genome accession   NZ_CP070381
Coordinates   1768849..1769193 (+) Length   114 a.a.
NCBI ID   WP_240188681.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1763849..1774193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS08800 (JVB21_08800) comGA 1766900..1767883 (+) 984 WP_205271936.1 competence type IV pilus ATPase ComGA Machinery gene
  JVB21_RS08805 (JVB21_08805) comGB 1767807..1768823 (+) 1017 WP_205272749.1 competence type IV pilus assembly protein ComGB Machinery gene
  JVB21_RS08810 (JVB21_08810) comGC 1768849..1769193 (+) 345 WP_240188681.1 competence type IV pilus major pilin ComGC Machinery gene
  JVB21_RS08815 (JVB21_08815) comGD 1769141..1769584 (+) 444 WP_240188597.1 competence type IV pilus minor pilin ComGD Machinery gene
  JVB21_RS08820 (JVB21_08820) comGF 1769556..1769996 (+) 441 WP_240188599.1 competence type IV pilus minor pilin ComGF Machinery gene
  JVB21_RS08825 (JVB21_08825) comGG 1770008..1770319 (+) 312 WP_205271938.1 competence type IV pilus minor pilin ComGG -
  JVB21_RS08830 (JVB21_08830) - 1770398..1770850 (+) 453 WP_200407576.1 zinc-dependent MarR family transcriptional regulator -
  JVB21_RS08835 (JVB21_08835) - 1770866..1771708 (+) 843 WP_205271939.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  JVB21_RS08840 (JVB21_08840) - 1771917..1772654 (+) 738 WP_200407574.1 metal ABC transporter ATP-binding protein -
  JVB21_RS08845 (JVB21_08845) - 1772647..1773456 (+) 810 WP_205271940.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12953.19 Da        Isoelectric Point: 5.8961

>NTDB_id=539563 JVB21_RS08810 WP_240188681.1 1768849..1769193(+) (comGC) [Lactococcus taiwanensis strain K_LL001]
MIKICVNNKKTVKLERGTVRAFTLIEMLIVLAIISILILLFVPNLIKEKAQVQKTGEAAVVKVVESQAQLYELDHDDIPT
LTTLMSAKLISEKQKESYDDYYAQNKDEKRALDD

Nucleotide


Download         Length: 345 bp        

>NTDB_id=539563 JVB21_RS08810 WP_240188681.1 1768849..1769193(+) (comGC) [Lactococcus taiwanensis strain K_LL001]
ATGATAAAAATTTGTGTTAATAATAAAAAAACAGTAAAGCTAGAACGTGGAACTGTCCGGGCTTTTACCCTGATTGAAAT
GCTCATTGTTTTAGCGATTATTAGTATCTTAATCTTGCTCTTTGTTCCTAATCTCATTAAAGAAAAAGCTCAAGTACAAA
AAACAGGTGAGGCAGCAGTTGTTAAAGTCGTGGAAAGTCAAGCACAACTCTATGAGTTAGACCATGATGATATTCCTACT
CTTACTACGTTGATGTCAGCTAAGCTTATTAGTGAGAAGCAAAAAGAAAGTTATGATGATTATTATGCTCAAAATAAAGA
TGAAAAGAGAGCTTTGGACGATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(20-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Lactococcus lactis subsp. cremoris KW2

76.699

90.351

0.693
  comYC Streptococcus gordonii str. Challis substr. CH1

57.282

90.351

0.518
  comYC Streptococcus mutans UA159

59.184

85.965

0.509
  comYC Streptococcus mutans UA140

59.184

85.965

0.509
  comGC/cglC Streptococcus mitis SK321

52.475

88.596

0.465
  comGC/cglC Streptococcus pneumoniae TIGR4

49.505

88.596

0.439
  comGC/cglC Streptococcus pneumoniae Rx1

49.505

88.596

0.439
  comGC/cglC Streptococcus pneumoniae D39

49.505

88.596

0.439
  comGC/cglC Streptococcus pneumoniae R6

49.505

88.596

0.439
  comGC/cglC Streptococcus mitis NCTC 12261

53.846

79.825

0.43
  comYC Streptococcus suis isolate S10

58.75

70.175

0.412