Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   JVB21_RS08820 Genome accession   NZ_CP070381
Coordinates   1769556..1769996 (+) Length   146 a.a.
NCBI ID   WP_240188599.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1764556..1774996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS08800 (JVB21_08800) comGA 1766900..1767883 (+) 984 WP_205271936.1 competence type IV pilus ATPase ComGA Machinery gene
  JVB21_RS08805 (JVB21_08805) comGB 1767807..1768823 (+) 1017 WP_205272749.1 competence type IV pilus assembly protein ComGB Machinery gene
  JVB21_RS08810 (JVB21_08810) comGC 1768849..1769193 (+) 345 WP_240188681.1 competence type IV pilus major pilin ComGC Machinery gene
  JVB21_RS08815 (JVB21_08815) comGD 1769141..1769584 (+) 444 WP_240188597.1 competence type IV pilus minor pilin ComGD Machinery gene
  JVB21_RS08820 (JVB21_08820) comGF 1769556..1769996 (+) 441 WP_240188599.1 competence type IV pilus minor pilin ComGF Machinery gene
  JVB21_RS08825 (JVB21_08825) comGG 1770008..1770319 (+) 312 WP_205271938.1 competence type IV pilus minor pilin ComGG -
  JVB21_RS08830 (JVB21_08830) - 1770398..1770850 (+) 453 WP_200407576.1 zinc-dependent MarR family transcriptional regulator -
  JVB21_RS08835 (JVB21_08835) - 1770866..1771708 (+) 843 WP_205271939.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  JVB21_RS08840 (JVB21_08840) - 1771917..1772654 (+) 738 WP_200407574.1 metal ABC transporter ATP-binding protein -
  JVB21_RS08845 (JVB21_08845) - 1772647..1773456 (+) 810 WP_205271940.1 metal ABC transporter permease -
  JVB21_RS08850 (JVB21_08850) - 1773516..1774400 (-) 885 WP_205271941.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16707.60 Da        Isoelectric Point: 9.3141

>NTDB_id=539565 JVB21_RS08820 WP_240188599.1 1769556..1769996(+) (comGF) [Lactococcus taiwanensis strain K_LL001]
MENLKKKSVRAYLLLESLIALLVLSGSILVINGLTNLLHQQLMSVQVEQTKDWQIFCEQMYAELDGASFDKVEGNFLYVT
KKAKKLRFGLMGDDFRKTSAQGTGYQPMLFGIKDVKIEQEQGIIKMTILFEKEGGRTFVYRFININ

Nucleotide


Download         Length: 441 bp        

>NTDB_id=539565 JVB21_RS08820 WP_240188599.1 1769556..1769996(+) (comGF) [Lactococcus taiwanensis strain K_LL001]
GTGGAAAATTTAAAAAAGAAATCAGTTAGAGCTTATTTACTCTTAGAAAGTTTGATTGCCTTGCTTGTCTTATCTGGATC
GATTTTAGTTATTAACGGCTTAACAAATCTTTTGCATCAGCAACTTATGAGTGTTCAAGTAGAACAAACGAAAGACTGGC
AGATTTTCTGTGAGCAAATGTATGCTGAACTTGATGGCGCAAGCTTTGACAAGGTAGAGGGTAATTTTTTATATGTGACC
AAGAAAGCTAAAAAACTTCGCTTTGGCTTAATGGGAGATGATTTTCGTAAAACATCGGCACAAGGAACTGGTTACCAGCC
TATGCTTTTTGGAATAAAAGATGTAAAAATAGAACAGGAACAAGGAATTATAAAAATGACGATTTTATTTGAAAAAGAAG
GAGGTCGGACATTCGTTTACAGATTCATAAATATCAACTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(44-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Lactococcus lactis subsp. cremoris KW2

56.835

95.205

0.541
  comYF Streptococcus mutans UA140

42.254

97.26

0.411
  comYF Streptococcus mutans UA159

41.549

97.26

0.404
  comGF/cglF Streptococcus mitis SK321

42.029

94.521

0.397
  comGF/cglF Streptococcus pneumoniae Rx1

41.304

94.521

0.39
  comGF/cglF Streptococcus pneumoniae D39

41.304

94.521

0.39
  comGF/cglF Streptococcus pneumoniae R6

41.304

94.521

0.39
  comGF/cglF Streptococcus pneumoniae TIGR4

41.304

94.521

0.39
  comGF/cglF Streptococcus mitis NCTC 12261

41.304

94.521

0.39