Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   JVB21_RS08805 Genome accession   NZ_CP070381
Coordinates   1767807..1768823 (+) Length   338 a.a.
NCBI ID   WP_205272749.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1762807..1773823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVB21_RS08795 (JVB21_08795) - 1763034..1766807 (+) 3774 Protein_1693 PolC-type DNA polymerase III -
  JVB21_RS08800 (JVB21_08800) comGA 1766900..1767883 (+) 984 WP_205271936.1 competence type IV pilus ATPase ComGA Machinery gene
  JVB21_RS08805 (JVB21_08805) comGB 1767807..1768823 (+) 1017 WP_205272749.1 competence type IV pilus assembly protein ComGB Machinery gene
  JVB21_RS08810 (JVB21_08810) comGC 1768849..1769193 (+) 345 WP_240188681.1 competence type IV pilus major pilin ComGC Machinery gene
  JVB21_RS08815 (JVB21_08815) comGD 1769141..1769584 (+) 444 WP_240188597.1 competence type IV pilus minor pilin ComGD Machinery gene
  JVB21_RS08820 (JVB21_08820) comGF 1769556..1769996 (+) 441 WP_240188599.1 competence type IV pilus minor pilin ComGF Machinery gene
  JVB21_RS08825 (JVB21_08825) comGG 1770008..1770319 (+) 312 WP_205271938.1 competence type IV pilus minor pilin ComGG -
  JVB21_RS08830 (JVB21_08830) - 1770398..1770850 (+) 453 WP_200407576.1 zinc-dependent MarR family transcriptional regulator -
  JVB21_RS08835 (JVB21_08835) - 1770866..1771708 (+) 843 WP_205271939.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  JVB21_RS08840 (JVB21_08840) - 1771917..1772654 (+) 738 WP_200407574.1 metal ABC transporter ATP-binding protein -
  JVB21_RS08845 (JVB21_08845) - 1772647..1773456 (+) 810 WP_205271940.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37928.14 Da        Isoelectric Point: 7.9525

>NTDB_id=539562 JVB21_RS08805 WP_205272749.1 1767807..1768823(+) (comGB) [Lactococcus taiwanensis strain K_LL001]
MKVSGKKLPLPKQVKLIQLMGNLLNNGFHLGEVVDFLERSGLVERNFVAKMRHGLAAGRNLATILDELHFSKSVVTQIDL
AEVHGDLSGTLVLIERNIRKHLAVRKKLLALSIYPVMLLVFLTGIIFGLRSYLLPQISGDEGGWRGNFATLLINHLPELI
GGGVLTLLCLTILSMLFFKKQTSLLKYSILVRIPLLADAVRLYLTGYFAHEWGNLIAQGVDLRNIFELMSTQKSQIFSEV
GSYLASGLVGGMSFSDLIAGLEFFQPELHLMIEYGEIKNKLGIELEIYGDECWEQFFVKIERMMQWIQPIVFLFVALMIV
LLYVAMLLPIYANMGNGL

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=539562 JVB21_RS08805 WP_205272749.1 1767807..1768823(+) (comGB) [Lactococcus taiwanensis strain K_LL001]
ATGAAGGTGAGCGGGAAAAAATTGCCTCTTCCCAAACAGGTGAAACTCATCCAACTCATGGGAAATCTATTGAATAATGG
TTTTCATCTGGGTGAAGTAGTGGACTTTCTGGAGCGCTCTGGACTGGTTGAAAGAAATTTTGTAGCAAAGATGCGCCACG
GGCTTGCTGCGGGGAGGAACCTAGCGACTATCTTAGACGAATTACATTTTTCTAAGTCCGTCGTAACGCAAATTGATTTA
GCAGAGGTCCATGGCGATCTCTCTGGAACTTTAGTGCTGATTGAAAGAAATATTAGAAAGCACTTAGCAGTTCGAAAAAA
GCTATTGGCATTATCAATCTATCCTGTGATGTTGCTGGTATTTCTTACAGGAATTATATTTGGCCTCAGAAGCTACTTAC
TGCCGCAAATTTCTGGAGATGAGGGAGGGTGGAGGGGCAATTTTGCTACCCTTCTTATTAACCATCTCCCAGAACTAATT
GGAGGAGGAGTCCTTACTCTTTTGTGTTTGACAATCCTTAGCATGCTTTTTTTTAAAAAGCAAACAAGCTTGTTAAAGTA
CAGCATATTAGTACGTATTCCCTTACTTGCAGATGCAGTAAGATTATATTTAACGGGCTATTTTGCGCATGAGTGGGGAA
ATTTAATTGCCCAAGGCGTGGACTTGCGTAATATTTTTGAACTGATGAGCACGCAAAAAAGTCAGATTTTCAGTGAAGTA
GGAAGCTACCTTGCGAGTGGATTAGTAGGAGGAATGAGTTTTAGTGACTTGATAGCTGGCCTTGAGTTTTTTCAACCAGA
ACTTCATTTAATGATTGAATATGGGGAAATAAAGAATAAATTAGGAATTGAGCTCGAAATTTATGGAGATGAATGTTGGG
AACAATTTTTTGTGAAAATTGAGCGTATGATGCAGTGGATTCAACCCATTGTCTTCCTTTTTGTTGCATTAATGATTGTT
CTTTTGTATGTGGCAATGCTTCTTCCGATTTATGCAAACATGGGAAATGGATTATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(17-135)

Type II secretion system (T2SS), protein F (T2SSF)

(208-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Lactococcus lactis subsp. cremoris KW2

58.58

100

0.586
  comYB Streptococcus gordonii str. Challis substr. CH1

51.952

98.521

0.512
  comGB/cglB Streptococcus mitis SK321

46.547

98.521

0.459
  comGB/cglB Streptococcus mitis NCTC 12261

45.646

98.521

0.45
  comGB/cglB Streptococcus pneumoniae Rx1

45.646

98.521

0.45
  comGB/cglB Streptococcus pneumoniae D39

45.646

98.521

0.45
  comGB/cglB Streptococcus pneumoniae R6

45.646

98.521

0.45
  comGB/cglB Streptococcus pneumoniae TIGR4

45.646

98.521

0.45
  comYB Streptococcus mutans UA159

46.082

94.379

0.435
  comYB Streptococcus mutans UA140

45.768

94.379

0.432