Detailed information
Bioinformatically predicted
Overview
| Name | comGD | Type | Machinery gene |
| Locus tag | JVB21_RS08815 | Genome accession | NZ_CP070381 |
| Coordinates | 1769141..1769584 (+) | Length | 147 a.a. |
| NCBI ID | WP_240188597.1 | Uniprot ID | - |
| Organism | Lactococcus taiwanensis strain K_LL001 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1764141..1774584
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JVB21_RS08800 (JVB21_08800) | comGA | 1766900..1767883 (+) | 984 | WP_205271936.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| JVB21_RS08805 (JVB21_08805) | comGB | 1767807..1768823 (+) | 1017 | WP_205272749.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| JVB21_RS08810 (JVB21_08810) | comGC | 1768849..1769193 (+) | 345 | WP_240188681.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| JVB21_RS08815 (JVB21_08815) | comGD | 1769141..1769584 (+) | 444 | WP_240188597.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| JVB21_RS08820 (JVB21_08820) | comGF | 1769556..1769996 (+) | 441 | WP_240188599.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| JVB21_RS08825 (JVB21_08825) | comGG | 1770008..1770319 (+) | 312 | WP_205271938.1 | competence type IV pilus minor pilin ComGG | - |
| JVB21_RS08830 (JVB21_08830) | - | 1770398..1770850 (+) | 453 | WP_200407576.1 | zinc-dependent MarR family transcriptional regulator | - |
| JVB21_RS08835 (JVB21_08835) | - | 1770866..1771708 (+) | 843 | WP_205271939.1 | metal ABC transporter solute-binding protein, Zn/Mn family | - |
| JVB21_RS08840 (JVB21_08840) | - | 1771917..1772654 (+) | 738 | WP_200407574.1 | metal ABC transporter ATP-binding protein | - |
| JVB21_RS08845 (JVB21_08845) | - | 1772647..1773456 (+) | 810 | WP_205271940.1 | metal ABC transporter permease | - |
| JVB21_RS08850 (JVB21_08850) | - | 1773516..1774400 (-) | 885 | WP_205271941.1 | RluA family pseudouridine synthase | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 17293.40 Da Isoelectric Point: 7.1368
>NTDB_id=539564 JVB21_RS08815 WP_240188597.1 1769141..1769584(+) (comGD) [Lactococcus taiwanensis strain K_LL001]
MMIIMLKIKMKRELWTIRGFTLLETLIVLSVTVLITLTFSINLESTLHRIKGELFILRFEHFYKITQEDAALFAEKESIS
VKNKRLYWEKECIDLPQEVDCSTFLITFDEKGENSSLQKVSFYLPEEKKTIIYQLELGSGKFKKEIS
MMIIMLKIKMKRELWTIRGFTLLETLIVLSVTVLITLTFSINLESTLHRIKGELFILRFEHFYKITQEDAALFAEKESIS
VKNKRLYWEKECIDLPQEVDCSTFLITFDEKGENSSLQKVSFYLPEEKKTIIYQLELGSGKFKKEIS
Nucleotide
Download Length: 444 bp
>NTDB_id=539564 JVB21_RS08815 WP_240188597.1 1769141..1769584(+) (comGD) [Lactococcus taiwanensis strain K_LL001]
ATGATGATTATTATGCTCAAAATAAAGATGAAAAGAGAGCTTTGGACGATTAGAGGATTTACATTGTTAGAAACTCTTAT
CGTATTATCAGTTACTGTTTTGATTACACTTACGTTTTCAATTAATCTTGAGAGCACCCTTCACCGCATAAAAGGAGAGC
TATTTATTTTACGTTTTGAACATTTTTATAAGATAACACAGGAAGATGCGGCTTTATTCGCAGAGAAAGAGAGTATCTCT
GTGAAGAATAAGAGACTTTATTGGGAAAAGGAGTGCATAGATTTGCCTCAAGAGGTTGACTGTAGCACTTTTCTAATTAC
TTTTGACGAAAAGGGAGAAAACTCAAGTTTACAAAAAGTGAGTTTTTATCTCCCCGAGGAGAAAAAAACAATTATTTATC
AATTGGAGCTAGGAAGTGGAAAATTTAAAAAAGAAATCAGTTAG
ATGATGATTATTATGCTCAAAATAAAGATGAAAAGAGAGCTTTGGACGATTAGAGGATTTACATTGTTAGAAACTCTTAT
CGTATTATCAGTTACTGTTTTGATTACACTTACGTTTTCAATTAATCTTGAGAGCACCCTTCACCGCATAAAAGGAGAGC
TATTTATTTTACGTTTTGAACATTTTTATAAGATAACACAGGAAGATGCGGCTTTATTCGCAGAGAAAGAGAGTATCTCT
GTGAAGAATAAGAGACTTTATTGGGAAAAGGAGTGCATAGATTTGCCTCAAGAGGTTGACTGTAGCACTTTTCTAATTAC
TTTTGACGAAAAGGGAGAAAACTCAAGTTTACAAAAAGTGAGTTTTTATCTCCCCGAGGAGAAAAAAACAATTATTTATC
AATTGGAGCTAGGAAGTGGAAAATTTAAAAAAGAAATCAGTTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD | Lactococcus lactis subsp. cremoris KW2 |
57.143 |
100 |
0.571 |